View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_low_8 (Length: 626)
Name: NF11835_low_8
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 18 - 374
Target Start/End: Original strand, 47339918 - 47340274
Alignment:
| Q |
18 |
ttaatggttatatttgaaaaatctccggacaagcttggtccattagatgaaaatgaccctgatggaaaagacggtgatgaagaatctgatgaagagggtg |
117 |
Q |
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| T |
47339918 |
ttaatggttatatttgaaaaatctccggacaagcttggtccattagatgaaaatgaccctgatggaaaagacggtgatgaagaatctgacgaagagggtg |
47340017 |
T |
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| Q |
118 |
gtgtggaggatgcactggaatccaaaatgaagaaccttgtagttgattgaattgtaactgttagtagctttctggttctactgcagaagtaactcttatg |
217 |
Q |
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| T |
47340018 |
gtgtggaggatgcactggaatccaaaatgaagaaccttgtagttgattgaattgtaactgttagtagcttactggttctactgcagaagtaactcttatg |
47340117 |
T |
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| Q |
218 |
acattagtatcagtttattcattcacagaatcatatgtaaccgtcaagatgcatcatttcaccaaaatattgaatcattatgcgtatcttggtgatactt |
317 |
Q |
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| T |
47340118 |
acattagtatcagtttattcattcacagaatcatatgtaaccgtcaagatgcatcatttcaccaaaatattgaatcattatgcgtatcttggtgatactt |
47340217 |
T |
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| Q |
318 |
taattttggtgatctaaccactgtgggtatctctggactagatatcgtaatcttgtc |
374 |
Q |
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| T |
47340218 |
taattttggtggtctaaccattgtgggtatctctggactagatatcgtaatcttgtc |
47340274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 440 - 604
Target Start/End: Original strand, 47340273 - 47340435
Alignment:
| Q |
440 |
tcgtcattagtgtattaacaccttggttatcatcagattcagtgttatgttggtcaatttacatgatcgctgtgacgagtattggagctattctaataga |
539 |
Q |
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| T |
47340273 |
tcgtcattagtgtattaacacct-ggttatcatcagattcagtgttatgttggtcaatttacatgatcgctgtgacgagtattggagctattctaataga |
47340371 |
T |
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| Q |
540 |
tactccaaaaccgattagaatatgtttaattttattctatttattttcaataaagtcataacatt |
604 |
Q |
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| T |
47340372 |
tactccaaaactgattagaatatgtttaattttattcta-ttattttcaataaagtcataacatt |
47340435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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