View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_low_82 (Length: 292)
Name: NF11835_low_82
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_82 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 7e-95; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 52185330 - 52185087
Alignment:
| Q |
1 |
ttatgtattatgcatctattatctatcaaataactggggnnnnnnnnattt-----aataatcacatcaattttataacatttcattattttatgaacaa |
95 |
Q |
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| T |
52185330 |
ttatgtattatgcatctattatctatcaaataactggattttttttttttttatagaataatcacatcaattttataacatttcattattttatgaacaa |
52185231 |
T |
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| Q |
96 |
attataactattatcaattgtcactttaaacttagatgacgagcatcatcaacattaattatttgttcaatatcctattatattcatcaattattttata |
195 |
Q |
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| T |
52185230 |
attataattattatcaattgtcactttaaacttagatgacgagtatcatcaacattaattatttgttcaatatcctattatattcatcaattattttata |
52185131 |
T |
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| Q |
196 |
cttacttcttttggtttctttcttatttttgcgcacatatacat |
239 |
Q |
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| T |
52185130 |
cttacttcttttggtttctttcttatttttgcgcacaaatacat |
52185087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 24489034 - 24488983
Alignment:
| Q |
52 |
aataatcacat-caattttataacatttcattattttatgaacaaattataa |
102 |
Q |
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| T |
24489034 |
aataatcacatacaaaattataacatttcattattttatgtacaaattataa |
24488983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 3335378 - 3335344
Alignment:
| Q |
1 |
ttatgtattatgcatctattatctatcaaataact |
35 |
Q |
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| T |
3335378 |
ttatgtcttatgcatctattatctatcaaataact |
3335344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 162
Target Start/End: Original strand, 31764046 - 31764145
Alignment:
| Q |
63 |
caattttataacatttcattattttatgaacaaattataactattatcaattgtcactttaaacttagatgacgagcatcatcaacattaattatttgtt |
162 |
Q |
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| T |
31764046 |
caattttataacatttcattatcttataggaaaattataaatttcattagttaccactttaaatttggacgatgagcatcatcaacattaattatttgtt |
31764145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 27568813 - 27568847
Alignment:
| Q |
1 |
ttatgtattatgcatctattatctatcaaataact |
35 |
Q |
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| T |
27568813 |
ttatgtattatgcatgtattatctatcaaataact |
27568847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 43449096 - 43449062
Alignment:
| Q |
1 |
ttatgtattatgcatctattatctatcaaataact |
35 |
Q |
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|||||||||||| |||||||||||||||||||||| |
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| T |
43449096 |
ttatgtattatgtatctattatctatcaaataact |
43449062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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