View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11835_low_84 (Length: 288)

Name: NF11835_low_84
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11835_low_84
NF11835_low_84
[»] chr6 (1 HSPs)
chr6 (7-288)||(31601432-31601727)


Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 7 - 288
Target Start/End: Original strand, 31601432 - 31601727
Alignment:
Q  7 actttcaccctttttaaaacatattgtctagaatttgaccttgcccttcatctatactatcccaaaatgatggactctcccaacaagaac---------- 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  31601432 actttcaccctttttaaaacatattgtctagaatttgaccttgcccttcatctatactatcccaaaatgatggactctcccaacaagaactaaaagcaag 31601531  T
Q  97 ------caatatgcattcttatgtgaattagttgcaatggttattaaaattcacatatttagctatacttttagaaagtagataacttggaagagagttt 190  Q
          |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31601532 tataaccaatatccattcttatgtgaattagttgcaatggttattaaaattcacatatttagctatacttttagaaagtagataacttggaagagagttt 31601631  T
Q  191 ttagtatgtaattagaaatgaaaattaacttagcaccactcaaaagtgtatggtgtcaaactcaaggttggaaagagattcatcttaagggacaaacc 288  Q
    ||||||||| | ||||||||||||||||| |||||||||||||||| |  |||||||||||||||||||||||||||||||||||||| |||||||||    
T  31601632 ttagtatgtgactagaaatgaaaattaacctagcaccactcaaaagag--tggtgtcaaactcaaggttggaaagagattcatcttaaaggacaaacc 31601727  T

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