View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_low_85 (Length: 284)
Name: NF11835_low_85
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_85 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 15 - 276
Target Start/End: Complemental strand, 44708777 - 44708516
Alignment:
| Q |
15 |
aattagaagttatttcctgagggtttggcttataagcttgctgtgcagcctttttggcatcatcagatcggttctgccagtattggtcgaaatgaactat |
114 |
Q |
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| T |
44708777 |
aattagaagttatttcctgagggtttggcttataagcttgctgtgcagcctttttggcatcatcagatcggttctgccagtattggtcgaaatgaactat |
44708678 |
T |
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| Q |
115 |
gttagcctcgaaggttgggactatagcaagaaaaaatacacaaccaaagagcaatctaagcttgttgacttccattctttcaaatatttcgttatcctta |
214 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
44708677 |
gttagcctcgaagattgggactatagcaagaaaaaatacacaaccaaagagcaatctacgcttgttgacttccattctttcaaatgtttcgttatcctta |
44708578 |
T |
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| Q |
215 |
tcaaattttctatgtttcttgtttgcttaattatgtttcttttatagtttgaaatcctcatt |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44708577 |
tcaaattttctatgtttcttgtttgcttaattatgtttcttttatagtttgaaatcctcatt |
44708516 |
T |
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