View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_low_88 (Length: 282)
Name: NF11835_low_88
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_88 |
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Alignment Details
Target: chr6 (Bit Score: 147; Significance: 1e-77; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 125 - 271
Target Start/End: Original strand, 34971793 - 34971939
Alignment:
| Q |
125 |
atgtacctataattttattattttgagtaaaagttaataagataacgttaatgaataatggaattaacagaaatctaaccttacaacttcaacaacaata |
224 |
Q |
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| T |
34971793 |
atgtacctataattttattattttgagtaaaagttaataagataacgttaatgaataatggaattaacagaaatctaaccttacaacttcaacaacaata |
34971892 |
T |
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| Q |
225 |
ttcaaaacgttgaaattgagaggatcttccttcaattttttcctctc |
271 |
Q |
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| T |
34971893 |
ttcaaaacgttgaaattgagaggatcttccttcaattttttcctctc |
34971939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 171 - 271
Target Start/End: Original strand, 34953130 - 34953230
Alignment:
| Q |
171 |
gttaatgaataatggaattaacagaaatctaaccttacaacttcaacaacaatattcaaaacgttgaaattgagaggatcttccttcaattttttcctct |
270 |
Q |
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| T |
34953130 |
gttaatgaataatggaatgaactgaaatctaacctgataacttcaacaacaatattcaaaacgttgaaattaagaggatcttccttcaattttttcctct |
34953229 |
T |
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| Q |
271 |
c |
271 |
Q |
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| T |
34953230 |
c |
34953230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 34971090 - 34971170
Alignment:
| Q |
1 |
aattattttttagagtaaattggagtgactacattatctacctcactaaatttttaatatttttgtcgagaatatgttcac |
81 |
Q |
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| T |
34971090 |
aattattttttagatttaattggagtgactacattatctacctcactaaatttttaatatttttgtcgagaatatgttcac |
34971170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 271
Target Start/End: Original strand, 35032698 - 35032774
Alignment:
| Q |
195 |
aaatctaaccttacaacttcaacaacaatattcaaaacgttgaaattgagaggatcttccttcaattttttcctctc |
271 |
Q |
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| T |
35032698 |
aaatctaacctgacaacttcaacagcaatattgaagacattgaaattgagtggatcgtccttcaattgtttcctctc |
35032774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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