View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_low_89 (Length: 280)
Name: NF11835_low_89
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_89 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 39290189 - 39290414
Alignment:
| Q |
1 |
tggaatgttgaagttgttattgttacaagtaatcctgaaggtagtagagatgttgttagagcttgtaacaaggctaagattcctgcatttggtccaattt |
100 |
Q |
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| T |
39290189 |
tggaatgttgaagttgttattgtcacaagtaatcctgaaggtagtagagatgttgttagagcttgtaacaaggctaagattcctgcatttggtccaattt |
39290288 |
T |
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| Q |
101 |
gggactcttgaatggctcaaaattacacaaaattttaaggcaagtaatttgttactccttctctgtttgcttgaaacactgtaaaaatttattaagttac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
39290289 |
gggactcttgaatggctcaaaattacacaaaattttaaggcaagtaatttgttactccttctctgtttgcttgaaacactgtaaaaatttatttagttac |
39290388 |
T |
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| Q |
201 |
ttttgtttacctatagtagaaactta |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
39290389 |
ttttgtttacctatagtagaaactta |
39290414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 39297069 - 39297221
Alignment:
| Q |
1 |
tggaatgttgaagttgttattgttacaagtaatcctgaaggtagtagagatgttgttagagcttgtaacaaggctaagattcctgcatttggtccaattt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
39297069 |
tggaatgttgaagttgttattgttacaagtaatcctgaaggtagtagagatgttgttagagcttgtaacaaggctaaaattcctgcttttggtccaattt |
39297168 |
T |
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| Q |
101 |
gggactcttgaatggctcaaaattacacaaaattttaaggcaagtaatttgttact |
156 |
Q |
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|||||||||||| || || || ||| ||| || ||||||||||||||||||||| |
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| T |
39297169 |
gggactcttgaaaggttctaa---acaaaaacttgtaaggcaagtaatttgttact |
39297221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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