View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11835_low_9 (Length: 624)
Name: NF11835_low_9
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 20 - 364
Target Start/End: Original strand, 37928947 - 37929290
Alignment:
| Q |
20 |
tgattagagtttatttcatgcagcgaagatttatatttaagaaatatgatattaagatatctctatttacgagcaagaatttagatgagtacacaaatat |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37928947 |
tgattagagtttatttcatgcagcgaagatttatatttaagaaatatgatattaagatatctctacttacgagcaagaatttagatgagtacacaaatat |
37929046 |
T |
|
| Q |
120 |
tattacctctgcctcaatatctattaatgtacgtatacttaaaatatcaatttattttattcgtgcgtacctgttaaactattctctcttatccaatctg |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37929047 |
tattacctctgcctcaatatctattaatgtacgtatacttaaa-tatcaatttattttattcgtgcgtacctgttaaactattctctcttatccaatctt |
37929145 |
T |
|
| Q |
220 |
tggtgaaatttattcatggatatcatgtgtacaaattttttgtcatccctatttactgttgcttattatatatgtctaactcgaacaaagtgaggtaaat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37929146 |
tggtgaaatttattcatggatatcatgtgtacaaattttttgtcatccctgtttactgttgcttattatatatgtctaactcgaacaaagtgaggtaaat |
37929245 |
T |
|
| Q |
320 |
atactagcgtgtgtatagaacaaattgtgttaatttaatttagac |
364 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37929246 |
atactagcgtgtgtatagaacaaattgtgttaatttaatttagac |
37929290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 449 - 496
Target Start/End: Original strand, 37929368 - 37929415
Alignment:
| Q |
449 |
gttggataggattaaataatatatgtattttgttgagatactcatgtc |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37929368 |
gttggataggattaaataatatatgtattttgttgagatactcatgtc |
37929415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 533 - 616
Target Start/End: Original strand, 37929452 - 37929538
Alignment:
| Q |
533 |
gcttctttaggccataaaactttgtttatccttcnnnnnnnn---ctttgtttatattatgtatttagggcattcgagtcctttgct |
616 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37929452 |
gcttctttaggccataaaactttgtttatccttaaaaaaaaaaaactttgtttatattatgtatttagggcattcgagtcctttgct |
37929538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University