View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11835_low_95 (Length: 269)
Name: NF11835_low_95
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_95 |
 | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0475 (1 HSPs) |
| | |
|
| [»] scaffold0199 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 27)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 259
Target Start/End: Complemental strand, 4471426 - 4471186
Alignment:
| Q |
19 |
aatgcattgttgaaactagcaaagcttcttcaccttagaggctttcacataacgtttgtcaacactgaatacaatcacaaagccttgctcaattcaagag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4471426 |
aatgcattgttgaaactagcaaagcttcttcaccttagaggctttcacataacgtttgtcaacactgaatacaatcacaaagccttgctcaattcaagag |
4471327 |
T |
|
| Q |
119 |
gtcctgattctcttgatggttttactgacattaactttgagaccattccaaatggttttactgtaatggaaagtggtgatcttattcaagacatacactc |
218 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4471326 |
gtcctgattctcttgatggtttcactgactttaactttgagaccattccaaatggttttactgcaatggaaagtggtgatcttattcaagacatacactc |
4471227 |
T |
|
| Q |
219 |
cttttttcgatcaatcatgacggacttccttcaaccctttg |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4471226 |
cttttttcgatcaatcatgacggacttccttcaaccctttg |
4471186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 258
Target Start/End: Complemental strand, 4462719 - 4462480
Alignment:
| Q |
19 |
aatgcattgttgaaactagcaaagcttcttcaccttagaggctttcacataacgtttgtcaacactgaatacaatcacaaagccttgctcaattcaagag |
118 |
Q |
| |
|
||||||||||||||||||| ||| || |||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4462719 |
aatgcattgttgaaactaggaaaactacttcaccttagaggttttcacataacctttgtcaacactgaatacaatcacaattgcttgctcaattcaagag |
4462620 |
T |
|
| Q |
119 |
gtcctgattctcttgatggttttactgacattaactttgagaccattccaaatggttttactgtaatggaaagtggtgatcttattcaagacatacactc |
218 |
Q |
| |
|
||||| ||||||| |||||||| |||||| ||||||||||||||||||||||||||||||| |||||||| ||||||| || |||||||| |||||| |
|
|
| T |
4462619 |
gtcctaattctctagatggtttcactgactttaactttgagaccattccaaatggttttacaacaatggaaactggtgatgtttttcaagacgtacactt |
4462520 |
T |
|
| Q |
219 |
cttttttcgatcaatcatgacggacttccttcaacccttt |
258 |
Q |
| |
|
||||||| ||||||||||| | ||||| ||||||||||| |
|
|
| T |
4462519 |
attttttcaatcaatcatgatgaacttcattcaacccttt |
4462480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 4265673 - 4265916
Alignment:
| Q |
19 |
aatgcattgttgaaactagcaaagcttcttcaccttagaggctttcacataacgtttgtcaacactgaatacaatcacaaagccttgctcaattcaagag |
118 |
Q |
| |
|
||||||||||| || |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
4265673 |
aatgcattgttcaatctaggaaagcttcttcaccttagaggctttcacataacctttgtcaacactgaatacaatcacaaacgcttgctcaaatcaagag |
4265772 |
T |
|
| Q |
119 |
gtcctgattctcttgatggttttactgacattaactttgagaccattccaaatggttttactgtaatggaa---agtggtgatcttattcaagacataca |
215 |
Q |
| |
|
|||| |||||||||||||||| | |||| |||| ||||||||||| ||| ||||| | ||| ||||||| | ||||||| || |||||||||| | |
|
|
| T |
4265773 |
gtccaaattctcttgatggtttcagtgactttaagtttgagaccataccagatggtctaactccaatggaaggcaatggtgatgctactcaagacatata |
4265872 |
T |
|
| Q |
216 |
ctccttttttcgatcaatcatgacggacttccttcaaccctttg |
259 |
Q |
| |
|
| | || | | ||||||||||||| |||||||||||||||||| |
|
|
| T |
4265873 |
ccctcttgtgcaatcaatcatgacgaacttccttcaaccctttg |
4265916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 23 - 176
Target Start/End: Complemental strand, 4618809 - 4618656
Alignment:
| Q |
23 |
cattgttgaaactagcaaagcttcttcaccttagaggctttcacataacgtttgtcaacactgaatacaatcacaaagccttgctcaattcaagaggtcc |
122 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
4618809 |
cattgttcaaactagcaaagcttcttcaccttagaggctttcacataacctttgttaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtcc |
4618710 |
T |
|
| Q |
123 |
tgattctcttgatggttttactgacattaactttgagaccattccaaatggttt |
176 |
Q |
| |
|
| || |||||||||| || ||| |||||||||||| ||||||| ||||||| |
|
|
| T |
4618709 |
aaaggcttttgatggtttcacggactttaactttgagagcattccagatggttt |
4618656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 19 - 176
Target Start/End: Original strand, 4488813 - 4488970
Alignment:
| Q |
19 |
aatgcattgttgaaactagcaaagcttcttcaccttagaggctttcacataacgtttgtcaacactgaatacaatcacaaagccttgctcaattcaagag |
118 |
Q |
| |
|
||||||||||||||||||| ||| || |||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
4488813 |
aatgcattgttgaaactaggaaaactacttcaccttagaggatttcacataacctttgtcaacactgaatacaatcacaaacgcttgctcaaatcaagag |
4488912 |
T |
|
| Q |
119 |
gtcctgattctcttgatggttttactgacattaactttgagaccattccaaatggttt |
176 |
Q |
| |
|
|||| || | |||||||||| ||||| ||| ||||||||| |||||| ||||||| |
|
|
| T |
4488913 |
gtccaaatgcctttgatggtttaactgattttagctttgagactattccagatggttt |
4488970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 19 - 176
Target Start/End: Complemental strand, 4575967 - 4575810
Alignment:
| Q |
19 |
aatgcattgttgaaactagcaaagcttcttcaccttagaggctttcacataacgtttgtcaacactgaatacaatcacaaagccttgctcaattcaagag |
118 |
Q |
| |
|
||||||||||||||| ||||||| || |||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
4575967 |
aatgcattgttgaaaatagcaaaactgcttcaccttagaggctttcacataacctttgttaacactgaatacaatcacaaacgtttgctcaaatcaagag |
4575868 |
T |
|
| Q |
119 |
gtcctgattctcttgatggttttactgacattaactttgagaccattccaaatggttt |
176 |
Q |
| |
|
|| || | |||||||||| |||||| ||||||||||||| || ||| ||||||| |
|
|
| T |
4575867 |
gtgaaaatgcctttgatggtttcactgactttaactttgagactataccagatggttt |
4575810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 33 - 176
Target Start/End: Complemental strand, 4581512 - 4581369
Alignment:
| Q |
33 |
actagcaaagcttcttcaccttagaggctttcacataacgtttgtcaacactgaatacaatcacaaagccttgctcaattcaagaggtcctgattctctt |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||| ||||||||||| | | || |
|
|
| T |
4581512 |
actagcaaagcttcttcaccttagaggctttcacataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcgttt |
4581413 |
T |
|
| Q |
133 |
gatggttttactgacattaactttgagaccattccaaatggttt |
176 |
Q |
| |
|
|||||||| || || ||| ||||||||| |||||| ||||||| |
|
|
| T |
4581412 |
gatggtttcaccgattttacctttgagactattccagatggttt |
4581369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 23 - 176
Target Start/End: Complemental strand, 4623815 - 4623662
Alignment:
| Q |
23 |
cattgttgaaactagcaaagcttcttcaccttagaggctttcacataacgtttgtcaacactgaatacaatcacaaagccttgctcaattcaagaggtcc |
122 |
Q |
| |
|
||||||| |||||||||||||||||| |||||| ||||||||||||||| |||| |||| ||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
4623815 |
cattgttcaaactagcaaagcttctttaccttaaaggctttcacataacctttggtcacaccgaatacaatcacaaacgcttgctcaaatcaagaggtcc |
4623716 |
T |
|
| Q |
123 |
tgattctcttgatggttttactgacattaactttgagaccattccaaatggttt |
176 |
Q |
| |
|
| | |||||||||| || ||| |||||||||||||||||||| ||||||| |
|
|
| T |
4623715 |
aaaggcctttgatggtttcacggactttaactttgagaccattccagatggttt |
4623662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 25 - 176
Target Start/End: Complemental strand, 4517846 - 4517695
Alignment:
| Q |
25 |
ttgttgaaactagcaaagcttcttcaccttagaggctttcacataacgtttgtcaacactgaatacaatcacaaagccttgctcaattcaagaggtcctg |
124 |
Q |
| |
|
||||| ||||||||||| |||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
4517846 |
ttgttaaaactagcaaaacttcttcatcttagaggctttcacataacctttgtcaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtccaa |
4517747 |
T |
|
| Q |
125 |
attctcttgatggttttactgacattaactttgagaccattccaaatggttt |
176 |
Q |
| |
|
| | |||||||||| ||||| ||| ||||||||| |||||| ||||||| |
|
|
| T |
4517746 |
aagcctttgatggtttcactgattttacctttgagactattccagatggttt |
4517695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 3173515 - 3173345
Alignment:
| Q |
19 |
aatgcattgttgaaactagcaaagcttcttcaccttagaggctttcacataacgtttgtcaacactgaatacaatcacaaagccttgctcaattcaagag |
118 |
Q |
| |
|
||||||||||||||||||||||| || |||||| ||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||| |||| | |
|
|
| T |
3173515 |
aatgcattgttgaaactagcaaaactacttcactttagaggctttcacataacctttgtaaacactgaatacaatcacaaacggttgctcaaatcaaagg |
3173416 |
T |
|
| Q |
119 |
gtcctgattctcttgatggttttactgacattaactttgagaccattccaaatggttttactgtaatggaa |
189 |
Q |
| |
|
|||| || | |||||||||| | ||| ||||||||||||| || ||| ||||||| ||| ||||||| |
|
|
| T |
3173415 |
gtccaaatgcctttgatggtttcaatgattttaactttgagactataccagatggtttaacttcaatggaa |
3173345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 23 - 176
Target Start/End: Complemental strand, 4558633 - 4558480
Alignment:
| Q |
23 |
cattgttgaaactagcaaagcttcttcaccttagaggctttcacataacgtttgtcaacactgaatacaatcacaaagccttgctcaattcaagaggtcc |
122 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||||||||||| | ||| |||||||||||||| |||||| |||||||| ||||||||||| |
|
|
| T |
4558633 |
cattgttgaaactagcaaaacttcttcaccttagaggatttcacataacctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtcc |
4558534 |
T |
|
| Q |
123 |
tgattctcttgatggttttactgacattaactttgagaccattccaaatggttt |
176 |
Q |
| |
|
|| | |||||||||| ||||| ||| ||||||||| ||||| ||||||| |
|
|
| T |
4558533 |
aaatgcctttgatggtttcactgattttagctttgagactattccggatggttt |
4558480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 31 - 122
Target Start/End: Original strand, 4612346 - 4612437
Alignment:
| Q |
31 |
aaactagcaaagcttcttcaccttagaggctttcacataacgtttgtcaacactgaatacaatcacaaagccttgctcaattcaagaggtcc |
122 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| || |||||||| ||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
4612346 |
aaactagcaaaacttcttcaccttagaggctttcacataacattcgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtcc |
4612437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 161
Target Start/End: Complemental strand, 4507419 - 4507281
Alignment:
| Q |
23 |
cattgttgaaactagcaaagcttcttcaccttagaggctttcacataacgtttgtcaacactgaatacaatcacaaagccttgctcaattcaagaggtcc |
122 |
Q |
| |
|
||||||| |||||||| ||||||||||||||| |||||||||||||||| ||||| ||||| ||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
4507419 |
cattgttcaaactagctaagcttcttcaccttcgaggctttcacataacctttgttaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtga |
4507320 |
T |
|
| Q |
123 |
tgattctcttgatggttttactgacattaactttgagac |
161 |
Q |
| |
|
|| | |||||||||| ||||| ||||||||||||| |
|
|
| T |
4507319 |
aaatgcctttgatggtttcactgattttaactttgagac |
4507281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 4627658 - 4627561
Alignment:
| Q |
23 |
cattgttgaaactagcaaagcttcttcaccttagaggctttcacataacgtttgtcaacactgaatacaatcacaaagccttgctcaattcaagaggt |
120 |
Q |
| |
|
||||||||| ||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
4627658 |
cattgttgatactagcaaaattacttcaccttagaggctttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggt |
4627561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 4594523 - 4594419
Alignment:
| Q |
18 |
aaatgcattgttgaaactagcaaagcttcttcaccttagaggctttcacataacgtttgtcaacactgaatacaatcacaaagccttgctcaattcaaga |
117 |
Q |
| |
|
|||| ||||||| ||||| ||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||| |||||||| |||||| |
|
|
| T |
4594523 |
aaatccattgttcaaacttgcaaaacttcttcaccttagaggatttcacataacctttgtcaacactgaatacaatcataaacgtttgctcaaatcaaga |
4594424 |
T |
|
| Q |
118 |
ggtcc |
122 |
Q |
| |
|
||||| |
|
|
| T |
4594423 |
ggtcc |
4594419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 35 - 140
Target Start/End: Original strand, 4513611 - 4513716
Alignment:
| Q |
35 |
tagcaaagcttcttcaccttagaggctttcacataacgtttgtcaacactgaatacaatcacaaagccttgctcaattcaagaggtcctgattctcttga |
134 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||| ||||| ||||| ||||||||||||||| |||||||| |||||||||||| || || |||| |
|
|
| T |
4513611 |
tagcaaaactacttcaccttagaggctttcacataacctttgttaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttga |
4513710 |
T |
|
| Q |
135 |
tggttt |
140 |
Q |
| |
|
|||||| |
|
|
| T |
4513711 |
tggttt |
4513716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 176
Target Start/End: Complemental strand, 4587140 - 4586987
Alignment:
| Q |
23 |
cattgttgaaactagcaaagcttcttcaccttagaggctttcacataacgtttgtcaacactgaatacaatcacaaagccttgctcaattcaagaggtcc |
122 |
Q |
| |
|
|||||||||||||||| || |||||||||||| |||| ||||||||||| ||||| ||||||||||||||||||||| ||||| || ||||||| ||| |
|
|
| T |
4587140 |
cattgttgaaactagctaaacttcttcaccttcgaggatttcacataacctttgtaaacactgaatacaatcacaaacggttgcttaagtcaagagctcc |
4587041 |
T |
|
| Q |
123 |
tgattctcttgatggttttactgacattaactttgagaccattccaaatggttt |
176 |
Q |
| |
|
|| | |||||| ||| ||||| ||| ||||||||| |||||| ||||||| |
|
|
| T |
4587040 |
aaatgcctttgatgatttaactgattttagctttgagactattccagatggttt |
4586987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 31 - 176
Target Start/End: Complemental strand, 4599663 - 4599518
Alignment:
| Q |
31 |
aaactagcaaagcttcttcaccttagaggctttcacataacgtttgtcaacactgaatacaatcacaaagccttgctcaattcaagaggtcctgattctc |
130 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||| ||||||| || || ||||| || |||||||||||| ||||||||| |||||||||||| |||||| |
|
|
| T |
4599663 |
aaactagcaaagattcttcaccttagaggattttacataaccttcgtgaacaccgagtacaatcacaaacgcttgctcaaatcaagaggtcctaattctc |
4599564 |
T |
|
| Q |
131 |
ttgatggttttactgacattaactttgagaccattccaaatggttt |
176 |
Q |
| |
|
| ||||||| ||||| || ||| ||||| |||||| ||||||| |
|
|
| T |
4599563 |
gtaatggtttcactgatttttccttcgagactattccagatggttt |
4599518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 123
Target Start/End: Complemental strand, 4603615 - 4603518
Alignment:
| Q |
26 |
tgttgaaactagcaaagcttcttcaccttagaggctttcacataacgtttgtcaacactgaatacaatcacaaagccttgctcaattcaagaggtcct |
123 |
Q |
| |
|
|||||||||||||||| || ||||||||||||| ||||||||||| ||||||||||| ||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
4603615 |
tgttgaaactagcaaaactatttcaccttagaggatttcacataacctttgtcaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcct |
4603518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 4482377 - 4482297
Alignment:
| Q |
19 |
aatgcattgttgaaactagcaaagcttcttcaccttagaggctttcacataacgtttgtcaacactgaatacaatcacaaa |
99 |
Q |
| |
|
||||||||||||||| ||| ||| || |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
4482377 |
aatgcattgttgaaaataggaaaactacttcaccttagaggctttcacataacctttgtcaacaccgaatacaatcacaaa |
4482297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 23 - 176
Target Start/End: Complemental strand, 4569578 - 4569429
Alignment:
| Q |
23 |
cattgttgaaactagcaaagcttcttcaccttagaggctttcacataacgtttgtcaacactgaatacaatcacaaagccttgctcaattcaagaggtcc |
122 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||||||| |||||||| ||||||||||| |
|
|
| T |
4569578 |
cattattgaaactagcaaaacttcttcaccttagaggctttcacataacctttgtcaacaccga----aatcacaaacatttgctcaaatcaagaggtcc |
4569483 |
T |
|
| Q |
123 |
tgattctcttgatggttttactgacattaactttgagaccattccaaatggttt |
176 |
Q |
| |
|
| | |||||||||| ||||| ||| ||||||||| |||||| ||||||| |
|
|
| T |
4569482 |
aaaagcctttgatggtttcactgattttacctttgagactattccagatggttt |
4569429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 176
Target Start/End: Complemental strand, 4562174 - 4562017
Alignment:
| Q |
19 |
aatgcattgttgaaactagcaaagcttcttcaccttagaggctttcacat-aacgtttgtcaacactgaatacaatcacaaagccttgctcaattcaaga |
117 |
Q |
| |
|
||||||||||||||| ||||||| || |||||||| |||||||||||||| ||| ||||| ||||||||||||||||||||| ||||| || |||||| |
|
|
| T |
4562174 |
aatgcattgttgaaaatagcaaaactgcttcacctaagaggctttcacataaacctttgttaacactgaatacaatcacaaacgtttgct-aaatcaaga |
4562076 |
T |
|
| Q |
118 |
ggtcctgattctcttgatggttttactgacattaactttgagaccattccaaatggttt |
176 |
Q |
| |
|
||| || | |||||||||| |||||| ||||||||||||| || ||| ||||||| |
|
|
| T |
4562075 |
ggtgaaaatgcctttgatggtttcactgactttaactttgagactataccagatggttt |
4562017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 4572474 - 4572376
Alignment:
| Q |
23 |
cattgttgaaactagcaaagcttcttcaccttagaggctttcacataacgtttgtcaacactgaatacaatcacaaagccttgctcaattcaagaggtc |
121 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||| ||||||||||| | ||| ||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
4572474 |
cattgttgcaactagcaaaatttcttcaccttagaggttttcacataacctatgtaaacactgaatacaatcacaaacggttgctcaagtcaagaggtc |
4572376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 23 - 120
Target Start/End: Original strand, 4258796 - 4258893
Alignment:
| Q |
23 |
cattgttgaaactagcaaagcttcttcaccttagaggctttcacataacgtttgtcaacactgaatacaatcacaaagccttgctcaattcaagaggt |
120 |
Q |
| |
|
||||||| |||||||| |||||||||||| ||| ||| ||||||||||| ||||||||||||||||| ||||||||| |||||||| ||||||||| |
|
|
| T |
4258796 |
cattgttcaaactagctaagcttcttcactttaaaggttttcacataacctttgtcaacactgaatataatcacaaacgtttgctcaaatcaagaggt |
4258893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 4565542 - 4565438
Alignment:
| Q |
18 |
aaatgcattgttgaaactagcaaagcttcttcaccttagaggctttcacataacgtttgtcaacactgaatacaatcacaaagccttgctcaattcaaga |
117 |
Q |
| |
|
|||| ||||||| ||||| ||||| ||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||| ||||| || |||||| |
|
|
| T |
4565542 |
aaatccattgttcaaacttgcaaaacttcttcaccttagaggatttcatataacctttgtcaacactgaatacaatcataaacgattgctaaaatcaaga |
4565443 |
T |
|
| Q |
118 |
ggtcc |
122 |
Q |
| |
|
||||| |
|
|
| T |
4565442 |
ggtcc |
4565438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 53 - 176
Target Start/End: Original strand, 4502943 - 4503066
Alignment:
| Q |
53 |
ttagaggctttcacataacgtttgtcaacactgaatacaatcacaaagccttgctcaattcaagaggtcctgattctcttgatggttttactgacattaa |
152 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| ||||||||||||||| ||||||||| ||||||||||| || | |||||||||| | ||| ||| |
|
|
| T |
4502943 |
ttagaggatttcacataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttcaatgattttac |
4503042 |
T |
|
| Q |
153 |
ctttgagaccattccaaatggttt |
176 |
Q |
| |
|
|||||||||||| ||| ||||||| |
|
|
| T |
4503043 |
ctttgagaccataccagatggttt |
4503066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 4255479 - 4255528
Alignment:
| Q |
73 |
tttgtcaacactgaatacaatcacaaagccttgctcaattcaagaggtcc |
122 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||| | ||||||||||| |
|
|
| T |
4255479 |
tttgtcaacaccgaatacaatcacaaacgcttgctcgaatcaagaggtcc |
4255528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 19 - 259
Target Start/End: Complemental strand, 24104607 - 24104364
Alignment:
| Q |
19 |
aatgcattgttgaaactagcaaagcttcttcaccttagaggctttcacataacgtttgtcaacactgaatacaatcacaaagccttgctcaattcaagag |
118 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||||||||||||||| || || ||||| ||||||||||||||| ||||||| | ||||||| |
|
|
| T |
24104607 |
aatgcattgttcaaactaggaaagcttcttcaccttagaggctttcacataaccttcgtgaacaccgaatacaatcacaaacgcttgctcgaatcaagag |
24104508 |
T |
|
| Q |
119 |
gtcctgattctcttgatggttttactgacattaactttgagaccattccaaatggttttactgtaatggaa---agtggtgatcttattcaagacataca |
215 |
Q |
| |
|
|||| |||||||||||||||| | |||| |||||||||||||||| ||| ||||| | ||| ||||||| | ||||||| ||| |||||||||| | |
|
|
| T |
24104507 |
atcctaattctcttgatggtttcaatgactttaactttgagaccataccagatggtctaactccaatggaaggcaatggtgatgttactcaagacatata |
24104408 |
T |
|
| Q |
216 |
ctccttttttcgatcaatcatgacggacttccttcaaccctttg |
259 |
Q |
| |
|
| | || | | ||||||||||||| |||||||||| ||||||| |
|
|
| T |
24104407 |
ccctcttgtgcaatcaatcatgacgaacttccttcagccctttg |
24104364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 23 - 140
Target Start/End: Original strand, 2071 - 2188
Alignment:
| Q |
23 |
cattgttgaaactagcaaagcttcttcaccttagaggctttcacataacgtttgtcaacactgaatacaatcacaaagccttgctcaattcaagaggtcc |
122 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||| ||||||||||| |
|
|
| T |
2071 |
cattgttcaaactagcaaagcttcttcaccttagaggctttcacataacctttgtcaacactgaatacaatcataaacgcttgctcaaatcaagaggtcc |
2170 |
T |
|
| Q |
123 |
tgattctcttgatggttt |
140 |
Q |
| |
|
| || ||||||||||||| |
|
|
| T |
2171 |
taatgctcttgatggttt |
2188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 31 - 140
Target Start/End: Complemental strand, 2324 - 2215
Alignment:
| Q |
31 |
aaactagcaaagcttcttcaccttagaggctttcacataacgtttgtcaacactgaatacaatcacaaagccttgctcaattcaagaggtcctgattctc |
130 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||| |||||||||||| || ||| |
|
|
| T |
2324 |
aaactagcaaagcttcttcaccttagaggctttcacataacctttgtcaacactgaatacaatcataaacgcttgctcaaatcaagaggtcctaatgctc |
2225 |
T |
|
| Q |
131 |
ttgatggttt |
140 |
Q |
| |
|
|||||||||| |
|
|
| T |
2224 |
ttgatggttt |
2215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 3088258 - 3088130
Alignment:
| Q |
18 |
aaatgcattgttgaaactagcaaagcttcttcaccttagaggctttcacataacgtttgtcaacactgaatacaatcacaaagccttgctcaattcaaga |
117 |
Q |
| |
|
|||| ||||||| ||||||||||| ||||||||||||| ||||||||||||||| |||||||| || |||||||||||||| ||||| || |||||| |
|
|
| T |
3088258 |
aaatccattgttaaaactagcaaaacttcttcaccttaaaggctttcacataacctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaaga |
3088159 |
T |
|
| Q |
118 |
ggtcctgattctcttgatggttttactga |
146 |
Q |
| |
|
||| || |||||||||||||||| ||||| |
|
|
| T |
3088158 |
ggttctaattctcttgatggtttcactga |
3088130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 23 - 174
Target Start/End: Complemental strand, 1282941 - 1282790
Alignment:
| Q |
23 |
cattgttgaaactagcaaagcttcttcaccttagaggctttcacataacgtttgtcaacactgaatacaatcacaaagccttgctcaattcaagaggtcc |
122 |
Q |
| |
|
||||||| ||||||||||| || |||||||||||||||||| ||||||| ||||| || |||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
1282941 |
cattgttcaaactagcaaaactacttcaccttagaggcttttacataacctttgttaatactgaatacaatcacaaacgcttgctcaaatcaagaggtcc |
1282842 |
T |
|
| Q |
123 |
tgattctcttgatggttttactgacattaactttgagaccattccaaatggt |
174 |
Q |
| |
|
|| | || |||||||| ||||| ||| |||||| ||||| ||| ||||| |
|
|
| T |
1282841 |
aaatgccctagatggtttcactgattttagctttgaaaccatcccagatggt |
1282790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 23 - 122
Target Start/End: Complemental strand, 1266 - 1167
Alignment:
| Q |
23 |
cattgttgaaactagcaaagcttcttcaccttagaggctttcacataacgtttgtcaacactgaatacaatcacaaagccttgctcaattcaagaggtcc |
122 |
Q |
| |
|
||||||| ||||||||||| ||| ||||||||||||||| ||| |||| | ||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
1266 |
cattgttcaaactagcaaaacttattcaccttagaggctctcatgtaacctatgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtcc |
1167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 23 - 122
Target Start/End: Complemental strand, 1676029 - 1675930
Alignment:
| Q |
23 |
cattgttgaaactagcaaagcttcttcaccttagaggctttcacataacgtttgtcaacactgaatacaatcacaaagccttgctcaattcaagaggtcc |
122 |
Q |
| |
|
||||||| ||||||||||| ||| ||||||||||||||| ||| |||| | ||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
1676029 |
cattgttcaaactagcaaaacttattcaccttagaggctctcatgtaacctatgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtcc |
1675930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 175
Target Start/End: Original strand, 20862433 - 20862582
Alignment:
| Q |
26 |
tgttgaaactagcaaagcttcttcaccttagaggctttcacataacgtttgtcaacactgaatacaatcacaaagccttgctcaattcaagaggtcctga |
125 |
Q |
| |
|
|||| ||||||||||| || |||||||||||||||||| ||||||| |||||||| |||||||||||||||||| |||||| || |||| ||||| | |
|
|
| T |
20862433 |
tgttaaaactagcaaaactacttcaccttagaggcttttacataacatttgtcaatactgaatacaatcacaaacgcttgcttaagtcaatgggtcc-aa |
20862531 |
T |
|
| Q |
126 |
ttctc-ttgatggttttactgacattaactttgagaccattccaaatggtt |
175 |
Q |
| |
|
| | | |||||||||| |||||| || |||||||||| ||||| |||||| |
|
|
| T |
20862532 |
taccctttgatggtttcactgactttcgctttgagaccgttccagatggtt |
20862582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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