View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_low_96 (Length: 260)
Name: NF11835_low_96
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_96 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 2925214 - 2925456
Alignment:
| Q |
1 |
acgagaaccttctcttgaactgaaattcccactaccaaccctatcagaacctgcaaccgcattcgaagacgaagaacgttgaaatcttctccttctccta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2925214 |
acgagaaccttctcttgaactgaaattcccactaccaatcctatcagaacctgcaaccgcattagaagacgaagaacgttgaaatcttctccttctccta |
2925313 |
T |
|
| Q |
101 |
tactcaaaacaaacacaaaccatatgaagaacacattgaagcacatatcccgcaatccacaatctcaacggcatttccggcgcttcgttccggctcaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2925314 |
tactcaaaacaaacacaaaccatatgaagaacacattgaagcacatatcccgcaatccacaatctcaacggcatttccggcgcttcgttccggctcaaaa |
2925413 |
T |
|
| Q |
201 |
acaacgcggtccccgctacaatgacgaaggcgaagttccaaac |
243 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2925414 |
acaaagcggtccccgctacaatgacgaaggcgaagttccaaac |
2925456 |
T |
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