View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_low_97 (Length: 260)
Name: NF11835_low_97
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_97 |
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Alignment Details
Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 32 - 136
Target Start/End: Original strand, 34693060 - 34693164
Alignment:
| Q |
32 |
cattgatcatgctacacacatacttgcgtgaaaaataagcagttttctttcttcatagtgtaataaaacgaaattaagcagtgttagtaaagctgacaaa |
131 |
Q |
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| T |
34693060 |
cattgatcatgctacacacatacttgcgtgaaaaataagcagttttctttcttcatagtgtaataaaacgaaattaagcagtgttagtaaagctgacaaa |
34693159 |
T |
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| Q |
132 |
acatg |
136 |
Q |
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||||| |
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| T |
34693160 |
acatg |
34693164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 197 - 260
Target Start/End: Original strand, 34693225 - 34693288
Alignment:
| Q |
197 |
attggtgatgtgtatttcatgcatgcatccatttttatttttaaaataatcaatttttgacttt |
260 |
Q |
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| T |
34693225 |
attggtgatgtgtatttcatgcatgcatccatttttatttttaaaataatcaatttttgacttt |
34693288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 240
Target Start/End: Original strand, 34685446 - 34685480
Alignment:
| Q |
206 |
gtgtatttcatgcatgcatccatttttatttttaa |
240 |
Q |
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| T |
34685446 |
gtgtatttcatgcatgcatccatttttatttttaa |
34685480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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