View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11836_high_1 (Length: 837)
Name: NF11836_high_1
Description: NF11836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11836_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 9 - 415
Target Start/End: Complemental strand, 39998558 - 39998164
Alignment:
| Q |
9 |
agcagagactcataaccaaaacaaccgtaggagaaatcttcaaaccaggtgcatcatcagtgtagaatctcagcatgttgcttcctccgctagatccacc |
108 |
Q |
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| T |
39998558 |
agcagagactcataaccaaaacaaccgtaggagaaatcttcaaaccaggtgcatcatcagtgtagaatctcagcatgttgcttcctccgctagatccacc |
39998459 |
T |
|
| Q |
109 |
tccgacgctggcggtgctgtttccggaggtgagacggcgacgacgcatgccggcagtggcggcagcggagccgcgtggagcggcgattccgcctcctcct |
208 |
Q |
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| T |
39998458 |
tccgacgctggcggtgctgtttccggaggtgagacggcgacgacgcatgccggcagtggcggcagcggagccgcgtggagcggcgagtccgcctcctcct |
39998359 |
T |
|
| Q |
209 |
ggacgggaggatgtggaggttgatgattgagattgagatgcgcctttagccatgatgaggatgatggaggagtgggagaaggtgtttagaggaaatagaa |
308 |
Q |
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| T |
39998358 |
ggacgggaggatgtggaggttgatgattgagattgagatgcgcctttagccatgatgaggatgatggaggagtgggagaaggtgtttagaggaaatagaa |
39998259 |
T |
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| Q |
309 |
ggggaaagtgaaagtgggtgaaaataaagactttagaggctgaggaagtagttagtataggatcgcaacaagggttgcgactacaaaacaaattagaatt |
408 |
Q |
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| T |
39998258 |
ggggaaagtgaaagtgggtgaaaataaagacttt------------agtagttagtataggatcgcaataagggttgcgactacaaaacaaattagaatt |
39998171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 174; E-Value: 4e-93
Query Start/End: Original strand, 596 - 802
Target Start/End: Complemental strand, 39997979 - 39997773
Alignment:
| Q |
596 |
caataacttttgattagcttaaaaaagattatttaccatttcaatttataatatcttttcaaatatctgaattgtctttaagtaattttggattctttac |
695 |
Q |
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| T |
39997979 |
caataacttttgattagcttaaaaaagattatttaccatttcaatttataatatcttttcaaatatctgaattgtctttaagtaattttggattctttac |
39997880 |
T |
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| Q |
696 |
ccactatcattaccccactcaatagtggttgaatatannnnnnnggtaatgaaatagtggttgaatattaattaatgtgtgatctgagttggttagaaat |
795 |
Q |
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| T |
39997879 |
ccactattattaccccactcaataatggttgaatatatttttttggtagtgaaatagtggttgaatattaattaatgtgtgatctgagttggttagaaat |
39997780 |
T |
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| Q |
796 |
taactta |
802 |
Q |
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||||||| |
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| T |
39997779 |
taactta |
39997773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 423 - 558
Target Start/End: Complemental strand, 39998125 - 39997997
Alignment:
| Q |
423 |
ttttatatctagattgtttgtttgaagtagatcgagtatcatttgaacgtacaaatgtagaaattaattatacgactaagtttaatttaattgttagaga |
522 |
Q |
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||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | | || |||||| |||||| |
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| T |
39998125 |
ttttagatctagattgtttgtttgaagtagatcgagcatcatttgaacgtacaaatgtagaaattaattatttacc--atttcaattta-----tagaga |
39998033 |
T |
|
| Q |
523 |
taatacattgcaatatttttcaattatttatgtcaa |
558 |
Q |
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| T |
39998032 |
taatacattgcaatatttttcaattatttatgtcaa |
39997997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 36635854 - 36635940
Alignment:
| Q |
13 |
gagactcataaccaaaacaaccgtaggagaaatcttcaaaccaggtgcatcatcagtgtagaatctcagcatgttgcttcctccgct |
99 |
Q |
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| T |
36635854 |
gagactcatcacgagaaccaccgtcggagaaatcttcaaaccaggtgcatcgtcggtgtagaatcgcagcatgttgttccctccgct |
36635940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 186
Target Start/End: Original strand, 36635988 - 36636033
Alignment:
| Q |
141 |
gacggcgacgacgcatgccggcagtggcggcagcggagccgcgtgg |
186 |
Q |
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| T |
36635988 |
gacggcgacgacgcataccggctgtagcggcagcggagccgcgtgg |
36636033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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