View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11836_high_13 (Length: 515)
Name: NF11836_high_13
Description: NF11836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11836_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 15 - 502
Target Start/End: Original strand, 44959807 - 44960304
Alignment:
| Q |
15 |
atgaaagggtcgttattgtgtaaaagatgaaaatatatgactctttatatgtgactcattga----aatgaattgtctaaagaaaaacttgataacaaaa |
110 |
Q |
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| T |
44959807 |
atgaaagggtcgttattgtgtaaaagatgaaaatatatgactctttatatgtgactcattgattgaaatgaattatctaaagaaaaacttgataacaaaa |
44959906 |
T |
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| Q |
111 |
tctactagtaaagtataccnnnnnnnn-gatccactaatataagagaaaggtgcatggaaacataaatcgcttt------ttctttttcataaatgtaca |
203 |
Q |
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| T |
44959907 |
tctactag-aaagtataccaaaaaaaaagatccactaatataagagaaaggtgcatggaaacataaatcgctttttctttttctttttcataaatgtaca |
44960005 |
T |
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| Q |
204 |
tagtctacatttaatctactttaatttgctgaaaggtgtagttgtgtatcattatttttctctttttgaggagaaaagtgtattatttatttttgtacta |
303 |
Q |
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| T |
44960006 |
taggctacatttaatctactttaatttgctgaaaggtgtagtggtgtatcattatttttctctttttggggagaaaagtgtattatttatttttgtacta |
44960105 |
T |
|
| Q |
304 |
ttgtttatgtatatatgtaaagtagagcttttgctttggtaattctgaagcaactcaaggccacctgtaaggtatataaattaaaaacggggtatctttt |
403 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44960106 |
ttgtgtatgtatatgtgtaaagtagagcttttgctttggtaattctgaagcaactcaaggccacatgtaaggtatataaattaaaaacggggtatctttt |
44960205 |
T |
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| Q |
404 |
tcttttatttctaaaaaattgtgtatcttcttaccaccgtttaataattattatatacatgttaaaaatggtgtatttgtagtacttgtgttgaggatg |
502 |
Q |
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| T |
44960206 |
tcttttatttctaaaaaattgtgtatcttcttaccaccgtttaataattattatatacatgttaaaaatggtgtatttgtagtacttgtgttgaggatg |
44960304 |
T |
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