View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11836_high_14 (Length: 515)
Name: NF11836_high_14
Description: NF11836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11836_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 449; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Original strand, 7704338 - 7704837
Alignment:
| Q |
1 |
tcagcatcggcataagttttataatcgtctcgtctgggcagttatcttcttcatgatcgccaacgtcatgccaatattgttagggggattcttcatgatc |
100 |
Q |
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|||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
7704338 |
tcagcatcggcataagatttataatcgtatcgtctggacagttatcttcttcatgatcgccaacgtcatgccaatattgttaggggagttcttcatgatc |
7704437 |
T |
|
| Q |
101 |
gccggtgccatagtagcaaccgccgcaacagacgacggccatgtgatcccacaaccaccagtagtaggtgatcaccctggatgtgcaagttctgattcat |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7704438 |
gccgatgccatagtagcaaccgccgcaacagacgacggccatgtgatcccacaaccaccagtagtaggtgatcaccctggatgtgcaagttctgattcat |
7704537 |
T |
|
| Q |
201 |
tcaaaccaccaacaccaactctactccaatgttatttacacaacctaaacctagcgctgcacgcacaagtttttgaggtcggcggcgtatacggcgaacc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
7704538 |
tcaaaccaccaacaccaactctactccaatgttatttacactacctaaacctagcgctgcacgcacaagtttttgaggtcggcagcgtttacggcgaacc |
7704637 |
T |
|
| Q |
301 |
gtgtggtccggcatatgaccacattaaaaacaagattcttttccccattctccccaagatcagacctcttctctcccgtggttagctaagctttgtttgg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7704638 |
gtgtggtccggcatatgaccacattaaaaacaagattcttttccccattctccccaagatcagacctcttctctcccgtggttagctaagctttgtttgg |
7704737 |
T |
|
| Q |
401 |
tccattgtagtttctttttctgttttctattcaaatttca--aatgatcacatgcttcaccctatattgttactagttcttgttattaataggcataact |
498 |
Q |
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| T |
7704738 |
tccattgtagtttctttttctgttttctattcaaatttcaataatgatcacatgcttcaccctatattcttactagttcttgttattaataggcataact |
7704837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 216 - 276
Target Start/End: Original strand, 8149044 - 8149103
Alignment:
| Q |
216 |
caactctactccaatgttatttacacaacctaaacctagcgctgcacgcacaagtttttga |
276 |
Q |
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| T |
8149044 |
caactctactcgaatgttatttacaca-cctaaacctagcgctgcacgcacaagtttttga |
8149103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 342
Target Start/End: Original strand, 8149115 - 8149148
Alignment:
| Q |
309 |
cggcatatgaccacattaaaaacaagattctttt |
342 |
Q |
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| T |
8149115 |
cggcatatgacaacattaaaaacaagattctttt |
8149148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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