View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11836_high_16 (Length: 479)

Name: NF11836_high_16
Description: NF11836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11836_high_16
NF11836_high_16
[»] chr2 (11 HSPs)
chr2 (154-478)||(10509090-10509410)
chr2 (11-137)||(10508971-10509097)
chr2 (11-98)||(10464766-10464853)
chr2 (11-86)||(10546918-10546993)
chr2 (11-89)||(10494363-10494441)
chr2 (397-478)||(10495124-10495205)
chr2 (11-91)||(10476044-10476124)
chr2 (142-174)||(15305601-15305633)
chr2 (11-90)||(7478921-7479000)
chr2 (143-175)||(4026762-4026794)
chr2 (11-87)||(10519641-10519717)
[»] chr5 (3 HSPs)
chr5 (141-175)||(35445998-35446032)
chr5 (142-175)||(12554407-12554440)
chr5 (142-174)||(16458072-16458104)
[»] chr1 (4 HSPs)
chr1 (141-175)||(17830097-17830131)
chr1 (141-171)||(37473342-37473372)
chr1 (143-176)||(29904704-29904737)
chr1 (139-171)||(15609033-15609065)
[»] chr8 (2 HSPs)
chr8 (141-175)||(1058167-1058201)
chr8 (142-174)||(32976004-32976036)
[»] chr6 (2 HSPs)
chr6 (141-175)||(8147645-8147679)
chr6 (142-174)||(30536422-30536454)
[»] chr4 (3 HSPs)
chr4 (141-175)||(31851397-31851431)
chr4 (143-175)||(42321972-42322004)
chr4 (142-174)||(43505900-43505932)
[»] chr3 (1 HSPs)
chr3 (141-171)||(20880420-20880450)
[»] chr7 (1 HSPs)
chr7 (142-174)||(45806420-45806452)


Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 154 - 478
Target Start/End: Original strand, 10509090 - 10509410
Alignment:
Q  154 ttatagcaaatgataaaataaataaagttataccttgtagtgtttcctccagttgaagaaggtaacatcagcagggatagaatcggaagttggattgtag 253  Q
    |||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10509090 ttatagcaaatgataaaat----aaagttataccttgtagtgtttcctccagttgaagaaggtaacatcagcagggatagaatcggaagttggattgtag 10509185  T
Q  254 atccatttacagtgagaatgggagtcaccttccttcaagttcaaatccctacgagtactcttccatgactcttgtttgacaaaagattcatagtattttt 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10509186 atccatttacagtgagaatgggagtcaccttccttcaagttcaaatccctacgagtactcttccatgactcttgtttgacaaaagattcatagtattttt 10509285  T
Q  354 cacttttcagaacttgttttctagcttcctccatctgttcgagatcaccggtgtagagccagtatctctcagtaatcctcaccttggaaggatcaaggag 453  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  10509286 cacttttcagaacttgttttctagcttcctccatctgttcgagatcaccggtgtagagccagtatctctcagtcatcctcaccttggaaggatcaaggag 10509385  T
Q  454 accagagatccagatgtttcgaatc 478  Q
    |||||||||||||||||||||||||    
T  10509386 accagagatccagatgtttcgaatc 10509410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 11 - 137
Target Start/End: Original strand, 10508971 - 10509097
Alignment:
Q  11 caaaggcacgcagagcattgtcaacctcaggagtgaaatcaacacaagaaggtgtgtcaattacgctcatctgcaaggacagacaaatgatgaagaatag 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10508971 caaaggcacgcagagcattgtcaacctcaggagtgaaatcaacacaagcaggtgtgtcaattacgctcatctgcaaggacagaaaaatgatgaagaatag 10509070  T
Q  111 gcatgcttggataaacagcttatagca 137  Q
    |||||||||||||||||||||||||||    
T  10509071 gcatgcttggataaacagcttatagca 10509097  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 10464766 - 10464853
Alignment:
Q  11 caaaggcacgcagagcattgtcaacctcaggagtgaaatcaacacaagaaggtgtgtcaattacgctcatctgcaaggacagacaaat 98  Q
    ||||||||||||| ||||| | ||||||||||||||||||||||  |  |||||||||||||||  ||||||||||||||||||||||    
T  10464766 caaaggcacgcagcgcattctgaacctcaggagtgaaatcaacatgatcaggtgtgtcaattacagtcatctgcaaggacagacaaat 10464853  T

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Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 10546918 - 10546993
Alignment:
Q  11 caaaggcacgcagagcattgtcaacctcaggagtgaaatcaacacaagaaggtgtgtcaattacgctcatctgcaa 86  Q
    |||||||||| |||||||| |||||||||| |||||| |||||||||  |||||||||||||||||||||||||||    
T  10546918 caaaggcacgtagagcattatcaacctcagaagtgaagtcaacacaatcaggtgtgtcaattacgctcatctgcaa 10546993  T

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Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 10494363 - 10494441
Alignment:
Q  11 caaaggcacgcagagcattgtcaacctcaggagtgaaatcaacacaagaaggtgtgtcaattacgctcatctgcaagga 89  Q
    ||||||||| ||||||||| | |||||||| |||||||||||||| || |||||||||||| ||| |||||||||||||    
T  10494363 caaaggcacacagagcattcttaacctcagtagtgaaatcaacacgagcaggtgtgtcaatcacggtcatctgcaagga 10494441  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 397 - 478
Target Start/End: Original strand, 10495124 - 10495205
Alignment:
Q  397 atcaccggtgtagagccagtatctctcagtaatcctcaccttggaaggatcaaggagaccagagatccagatgtttcgaatc 478  Q
    |||||||| ||| ||||||||||||||||| |||||||  | ||||||||| | ||||||||| ||||||| ||| ||||||    
T  10495124 atcaccggcgtatagccagtatctctcagtcatcctcatttcggaaggatccaagagaccagatatccagacgttgcgaatc 10495205  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 91
Target Start/End: Original strand, 10476044 - 10476124
Alignment:
Q  11 caaaggcacgcagagcattgtcaacctcaggagtgaaatcaacacaagaaggtgtgtcaattacgctcatctgcaaggaca 91  Q
    ||||||||||||||||||| | |||||||| |||||||||||||  |  |||||||||||  || ||||||||||| ||||    
T  10476044 caaaggcacgcagagcattctgaacctcagcagtgaaatcaacattatcaggtgtgtcaagcacactcatctgcaatgaca 10476124  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 174
Target Start/End: Original strand, 15305601 - 15305633
Alignment:
Q  142 cataagctatttttatagcaaatgataaaataa 174  Q
    |||||||||||||||||||||||||||||||||    
T  15305601 cataagctatttttatagcaaatgataaaataa 15305633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 7479000 - 7478921
Alignment:
Q  11 caaaggcacgcagagcattgtcaacctcaggagtgaaatcaacacaagaaggtgtgtcaattacgctcatctgcaaggac 90  Q
    |||||||| |||||||| | | |||||||| |||||||||||||  |  |||||||||||| ||  ||||||||||||||    
T  7479000 caaaggcaggcagagcactcttaacctcagcagtgaaatcaacatgaacaggtgtgtcaatcacagtcatctgcaaggac 7478921  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 143 - 175
Target Start/End: Original strand, 4026762 - 4026794
Alignment:
Q  143 ataagctatttttatagcaaatgataaaataaa 175  Q
    ||||||||||||||||||||| |||||||||||    
T  4026762 ataagctatttttatagcaaaagataaaataaa 4026794  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 10519641 - 10519717
Alignment:
Q  11 caaaggcacgcagagcattgtcaacctcaggagtgaaatcaacacaagaaggtgtgtcaattacgctcatctgcaag 87  Q
    ||||||||| ||||||||| | ||| ||||  |||||||||| ||||  || |||||| |||| |||||||||||||    
T  10519641 caaaggcacccagagcattcttaacttcagaggtgaaatcaaaacaattagttgtgtccattatgctcatctgcaag 10519717  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 175
Target Start/End: Original strand, 35445998 - 35446032
Alignment:
Q  141 acataagctatttttatagcaaatgataaaataaa 175  Q
    |||||||||||||||||||||||||||||||||||    
T  35445998 acataagctatttttatagcaaatgataaaataaa 35446032  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 175
Target Start/End: Original strand, 12554407 - 12554440
Alignment:
Q  142 cataagctatttttatagcaaatgataaaataaa 175  Q
    |||||||||||||||||| |||||||||||||||    
T  12554407 cataagctatttttatagtaaatgataaaataaa 12554440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 174
Target Start/End: Complemental strand, 16458104 - 16458072
Alignment:
Q  142 cataagctatttttatagcaaatgataaaataa 174  Q
    |||||||||||||||||||||| ||||||||||    
T  16458104 cataagctatttttatagcaaaagataaaataa 16458072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 175
Target Start/End: Original strand, 17830097 - 17830131
Alignment:
Q  141 acataagctatttttatagcaaatgataaaataaa 175  Q
    |||||||||||||||||||||||||||||||||||    
T  17830097 acataagctatttttatagcaaatgataaaataaa 17830131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 171
Target Start/End: Original strand, 37473342 - 37473372
Alignment:
Q  141 acataagctatttttatagcaaatgataaaa 171  Q
    |||||||||||||||||||||||||||||||    
T  37473342 acataagctatttttatagcaaatgataaaa 37473372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 176
Target Start/End: Original strand, 29904704 - 29904737
Alignment:
Q  143 ataagctatttttatagcaaatgataaaataaat 176  Q
    ||||||||||||||||||||| ||||||||||||    
T  29904704 ataagctatttttatagcaaaagataaaataaat 29904737  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 171
Target Start/End: Original strand, 15609033 - 15609065
Alignment:
Q  139 agacataagctatttttatagcaaatgataaaa 171  Q
    ||||||||||||||||||||||||| |||||||    
T  15609033 agacataagctatttttatagcaaaagataaaa 15609065  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 175
Target Start/End: Complemental strand, 1058201 - 1058167
Alignment:
Q  141 acataagctatttttatagcaaatgataaaataaa 175  Q
    |||||||||||||||||||||||| ||||||||||    
T  1058201 acataagctatttttatagcaaatcataaaataaa 1058167  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 174
Target Start/End: Original strand, 32976004 - 32976036
Alignment:
Q  142 cataagctatttttatagcaaatgataaaataa 174  Q
    |||||||||||||||||||||| ||||||||||    
T  32976004 cataagctatttttatagcaaaagataaaataa 32976036  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 175
Target Start/End: Original strand, 8147645 - 8147679
Alignment:
Q  141 acataagctatttttatagcaaatgataaaataaa 175  Q
    ||||||||||||||||||||||| |||||||||||    
T  8147645 acataagctatttttatagcaaaagataaaataaa 8147679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 174
Target Start/End: Original strand, 30536422 - 30536454
Alignment:
Q  142 cataagctatttttatagcaaatgataaaataa 174  Q
    ||||||||||| |||||||||||||||||||||    
T  30536422 cataagctattattatagcaaatgataaaataa 30536454  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 175
Target Start/End: Original strand, 31851397 - 31851431
Alignment:
Q  141 acataagctatttttatagcaaatgataaaataaa 175  Q
    |||||||||||||||||| ||||||||||||||||    
T  31851397 acataagctatttttataacaaatgataaaataaa 31851431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 143 - 175
Target Start/End: Complemental strand, 42322004 - 42321972
Alignment:
Q  143 ataagctatttttatagcaaatgataaaataaa 175  Q
    |||||||||||||||| ||||||||||||||||    
T  42322004 ataagctatttttataacaaatgataaaataaa 42321972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 174
Target Start/End: Original strand, 43505900 - 43505932
Alignment:
Q  142 cataagctatttttatagcaaatgataaaataa 174  Q
    |||||||||||||||||||||| ||||||||||    
T  43505900 cataagctatttttatagcaaaagataaaataa 43505932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 171
Target Start/End: Original strand, 20880420 - 20880450
Alignment:
Q  141 acataagctatttttatagcaaatgataaaa 171  Q
    |||||||||||||||||||||||||||||||    
T  20880420 acataagctatttttatagcaaatgataaaa 20880450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 174
Target Start/End: Complemental strand, 45806452 - 45806420
Alignment:
Q  142 cataagctatttttatagcaaatgataaaataa 174  Q
    |||||||||||||||||||||| ||||||||||    
T  45806452 cataagctatttttatagcaaaagataaaataa 45806420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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