View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11836_high_22 (Length: 411)
Name: NF11836_high_22
Description: NF11836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11836_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 5 - 391
Target Start/End: Original strand, 42393335 - 42393721
Alignment:
| Q |
5 |
aagtcattccctttataatcccatttaccatccaagaaccttgtcggatcaaattctagcggtttctcccaaatggaagggtctctatgaatagcccaaa |
104 |
Q |
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| T |
42393335 |
aagtcattccctttataatcccatttaccatccaagaaccttgtcggatcaaattctagcggtttctcccaaatggaagggtctctatgaatagcccaaa |
42393434 |
T |
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| Q |
105 |
cgttcacaaacacacaagacccctttggaattgtgtagcctcctacgttggtggtttcacttgggcaatgaggcattagaagtggaagtgatgggtgcaa |
204 |
Q |
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| T |
42393435 |
cgttcacaaacacacaagacccctttggaattgtgtagcctcctacgttggtggtttcacttgggcaatgagacattagaagtggaagtgatgggtgcaa |
42393534 |
T |
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| Q |
205 |
acgaagggtttctttcattactgcttgcaagtagggtagcttgtgaatatgagactcttctactaagttatctttcccaaccactgcttctaattcctct |
304 |
Q |
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| T |
42393535 |
acgaagggtttctttcattactgcttgcaagtagggtagcttgtgaatatgagactcttctactaagttatctttcccaaccactgcttccaattcctct |
42393634 |
T |
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| Q |
305 |
tgaaccttcctcattactcctggtttgttcattatttctgccattgcaaactcaacggtattggaggatgtgtctgatccaccaagt |
391 |
Q |
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| T |
42393635 |
tgaaccttcctcattactcctggtttgttcatcatttctgccattgcaaattcaacggtattggaggatgtgtctgatccaccaagt |
42393721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 5 - 387
Target Start/End: Original strand, 42376783 - 42377165
Alignment:
| Q |
5 |
aagtcattccctttataatcccatttaccatccaagaaccttgtcggatcaaattctagcggtttctcccaaatggaagggtctctatgaatagcccaaa |
104 |
Q |
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| T |
42376783 |
aagtcattcccactataatcccatttaccatccaagaaccttgtaggatcaaattctagtgggttctcccaaacataagggtctctatgaatagcccaaa |
42376882 |
T |
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| Q |
105 |
cgttcacaaacacacaagacccctttggaattgtgtagcctcctacgttggtggtttcacttgggcaatgaggcattagaagtggaagtgatgggtgcaa |
204 |
Q |
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|||| | ||| |||| ||| |||| |||||||||||||||||| | ||||||||||||||||||||| ||||| | || ||||||||||| ||||| || |
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| T |
42376883 |
cgttgataaagacacgagatccctctggaattgtgtagcctccaatgttggtggtttcacttgggcagtgagggactaaaagtggaagtgcagggtgtaa |
42376982 |
T |
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| Q |
205 |
acgaagggtttctttcattactgcttgcaagtagggtagcttgtgaatatgagactcttctactaagttatctttcccaaccactgcttctaattcctct |
304 |
Q |
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| T |
42376983 |
acgaagagtttctttcatcactgcatgtaagtaggttagcttgtgaatatgagactcttctactaagttatcttttccaaccacagtttctaactcctct |
42377082 |
T |
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| Q |
305 |
tgaaccttcctcattactcctggtttgttcattatttctgccattgcaaactcaacggtattggaggatgtgtctgatccacc |
387 |
Q |
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| T |
42377083 |
tgaaccttcctcatcacttctggtttgttcatcatttctgccattacaaactcaattgtgttggaggatgtgtctgatccacc |
42377165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 101 - 387
Target Start/End: Original strand, 42387228 - 42387513
Alignment:
| Q |
101 |
caaacgttcacaaacacacaagacccctttggaattgtgtagcctcctacgttggtggtttcacttgggcaatgaggcattagaagtggaagtgatgggt |
200 |
Q |
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|||||||| | ||| |||| ||| |||| |||||||||||||||||| | ||||||||||||||||||||| ||||| | || ||||||||||| ||||| |
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| T |
42387228 |
caaacgttgataaagacacgagatccctctggaattgtgtagcctccaatgttggtggtttcacttgggcagtgagggactaaaagtggaagtgttgggt |
42387327 |
T |
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| Q |
201 |
gcaaacgaagggtttctttcattactgcttgcaagtagggtagcttgtgaatatgagactcttctactaagttatctttcccaaccactgcttctaattc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| | ||| |
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| T |
42387328 |
gcaaacgaagggtttctttcattactgcttgcaagtagggtagcttttgaatatgagactcttctactaagttatctttcccaaccacgatttccagttc |
42387427 |
T |
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| Q |
301 |
ctcttgaaccttcctcattactcctggtttgttcattatttctgccattgcaaactcaacggtattggaggatgtgtctgatccacc |
387 |
Q |
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|||||||||||||||||||||| |||| |||| ||| |||| ||| ||| ||||||||| || ||||||||||||||||||||||| |
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| T |
42387428 |
ctcttgaaccttcctcattacttctgg-ttgtccatcatttatgctattacaaactcaattgtgttggaggatgtgtctgatccacc |
42387513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 42387179 - 42387220
Alignment:
| Q |
5 |
aagtcattccctttataatcccatttaccatccaagaacctt |
46 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| |
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| T |
42387179 |
aagtcattcccactataatcccatttaccatccaagaacctt |
42387220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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