View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11836_high_25 (Length: 357)

Name: NF11836_high_25
Description: NF11836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11836_high_25
NF11836_high_25
[»] chr4 (3 HSPs)
chr4 (1-197)||(37783750-37783946)
chr4 (197-347)||(37783971-37784121)
chr4 (97-150)||(55827307-55827360)
[»] chr7 (3 HSPs)
chr7 (107-185)||(5026141-5026220)
chr7 (96-137)||(14773460-14773501)
chr7 (96-137)||(15223912-15223953)
[»] chr3 (1 HSPs)
chr3 (97-143)||(46829115-46829161)
[»] chr5 (3 HSPs)
chr5 (97-146)||(34252787-34252836)
chr5 (97-143)||(34252708-34252754)
chr5 (99-143)||(9956571-9956615)
[»] chr2 (3 HSPs)
chr2 (94-186)||(24037572-24037665)
chr2 (97-146)||(10459336-10459385)
chr2 (97-150)||(29291130-29291183)
[»] chr1 (2 HSPs)
chr1 (95-132)||(27528362-27528399)
chr1 (97-163)||(31784788-31784854)
[»] chr6 (5 HSPs)
chr6 (95-163)||(9675751-9675819)
chr6 (94-189)||(33822276-33822372)
chr6 (95-197)||(30531196-30531299)
chr6 (97-163)||(31323867-31323933)
chr6 (112-187)||(31323820-31323896)


Alignment Details
Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 37783750 - 37783946
Alignment:
Q  1 tatgcaaaattcttttttgagatgaagtgataatttactttgaatgtaaagaatattttgaaatcctctgacaaaaatgattttgccaaaaatatgtact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37783750 tatgcaaaattcttttttgagatgaagtgataatttactttgaatttaaagaatattttgaaatcctatgacaaaaatgattttgccaaaaatatgtact 37783849  T
Q  101 cccttcgtcctaaaatgtaagcaaaaattggttaacagaagttgatatatctagtaccaatttgtaccgcatacatcaacttatgttaactcgtttt 197  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||  ||||| |||| ||||||||||||||||||||||||||||    
T  37783850 cccttggtcctaaaatgtaaacaaaaattggttaacagaagttgatatatctagtataaatttataccacatacatcaacttatgttaactcgtttt 37783946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 197 - 347
Target Start/End: Original strand, 37783971 - 37784121
Alignment:
Q  197 taagataaaaacaaatattaacatagatcagcaagctgagagcagaagcacatataaatttgtactagggtactattaatatgatagctacatctagtcc 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37783971 taagataaaaacaaatattaacatagatcagcaagctgagagcagaagcacatataaatttgtactagggtactattaatatgatagctacatctagtcc 37784070  T
Q  297 cttctttacgtaagaaatttttcattattcataactcaatgccaccctatg 347  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37784071 cttctttacgtaagaaatttttcattattcataactcaatgccaccctatg 37784121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 55827360 - 55827307
Alignment:
Q  97 tactcccttcgtcctaaaatgtaagcaaaaattggttaacagaagttgatatat 150  Q
    |||||| ||||||| ||||| ||||||||||||||| |||| ||||| ||||||    
T  55827360 tactccattcgtcccaaaatataagcaaaaattggtcaacaaaagttaatatat 55827307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 185
Target Start/End: Original strand, 5026141 - 5026220
Alignment:
Q  107 gtcctaaaatgtaagcaaaaattggttaacagaagttgatatatctagtac-caatttgtaccgcatacatcaacttatg 185  Q
    |||| ||||| |||||||||||||||||||| ||||| |||||| |||| |  ||||||||||  |||||||||||||||    
T  5026141 gtcccaaaatataagcaaaaattggttaacaaaagttaatatatttagtccaaaatttgtaccaaatacatcaacttatg 5026220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 137
Target Start/End: Original strand, 14773460 - 14773501
Alignment:
Q  96 gtactcccttcgtcctaaaatgtaagcaaaaattggttaaca 137  Q
    |||||| ||||||||||||||||||| |||||||||| ||||    
T  14773460 gtactctcttcgtcctaaaatgtaagtaaaaattggtgaaca 14773501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 137
Target Start/End: Original strand, 15223912 - 15223953
Alignment:
Q  96 gtactcccttcgtcctaaaatgtaagcaaaaattggttaaca 137  Q
    |||||| ||||||||||||||||||| |||||||||| ||||    
T  15223912 gtactctcttcgtcctaaaatgtaagtaaaaattggtgaaca 15223953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 143
Target Start/End: Complemental strand, 46829161 - 46829115
Alignment:
Q  97 tactcccttcgtcctaaaatgtaagcaaaaattggttaacagaagtt 143  Q
    |||||||||||||||||||| ||||||||||||||| |||| |||||    
T  46829161 tactcccttcgtcctaaaatataagcaaaaattggtcaacaaaagtt 46829115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 34252836 - 34252787
Alignment:
Q  97 tactcccttcgtcctaaaatgtaagcaaaaattggttaacagaagttgat 146  Q
    |||||||| ||||| ||||||||||||||||| |||||||| ||||||||    
T  34252836 tactccctccgtcccaaaatgtaagcaaaaatgggttaacataagttgat 34252787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 143
Target Start/End: Original strand, 34252708 - 34252754
Alignment:
Q  97 tactcccttcgtcctaaaatgtaagcaaaaattggttaacagaagtt 143  Q
    |||||||| ||||| ||||||||||||||||||||| |||| |||||    
T  34252708 tactccctccgtcccaaaatgtaagcaaaaattggtcaacaaaagtt 34252754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 9956615 - 9956571
Alignment:
Q  99 ctcccttcgtcctaaaatgtaagcaaaaattggttaacagaagtt 143  Q
    |||||| ||||| |||||||||| ||||||||||||||| |||||    
T  9956615 ctccctccgtcccaaaatgtaagtaaaaattggttaacaaaagtt 9956571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 186
Target Start/End: Original strand, 24037572 - 24037665
Alignment:
Q  94 atgtactcccttcgtcctaaaatgtaagcaaaaattggttaacagaagttgatatatctagtaccaattt-gtaccgcatacatcaacttatgt 186  Q
    ||||||||| | |||||||||||||||||||||||  || |||| |||||||||||| | |||| ||||| | ||   ||||||||||||||||    
T  24037572 atgtactccatccgtcctaaaatgtaagcaaaaatgagtcaacataagttgatatatttggtacaaattttgaacaaaatacatcaacttatgt 24037665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 10459385 - 10459336
Alignment:
Q  97 tactcccttcgtcctaaaatgtaagcaaaaattggttaacagaagttgat 146  Q
    |||||||| ||||| |||||||||||||| |||||| |||| ||||||||    
T  10459385 tactccctccgtcccaaaatgtaagcaaagattggtcaacataagttgat 10459336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 29291183 - 29291130
Alignment:
Q  97 tactcccttcgtcctaaaatgtaagcaaaaattggttaacagaagttgatatat 150  Q
    |||||||| ||||| ||||||||||||||||||||| || | ||||| ||||||    
T  29291183 tactccctccgtcccaaaatgtaagcaaaaattggtcaataaaagttaatatat 29291130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 27528399 - 27528362
Alignment:
Q  95 tgtactcccttcgtcctaaaatgtaagcaaaaattggt 132  Q
    |||||||||||||||| |||||||||||||||||||||    
T  27528399 tgtactcccttcgtccgaaaatgtaagcaaaaattggt 27528362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 163
Target Start/End: Complemental strand, 31784854 - 31784788
Alignment:
Q  97 tactcccttcgtcctaaaatgtaagcaaaaattggttaacagaagttgatatatctagtaccaattt 163  Q
    ||||||||  |||| |||||||||||||||||| || |||| |||||||| |||||| ||| |||||    
T  31784854 tactccctctgtcccaaaatgtaagcaaaaatttgtcaacataagttgatgtatctaatacaaattt 31784788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 9675751 - 9675819
Alignment:
Q  95 tgtactcccttcgtcctaaaatgtaagcaaaaattggttaacagaagttgatatatctagtaccaattt 163  Q
    |||||||||| ||||  ||||||||||||||||||||| |||| ||||||||  |||| |||| |||||    
T  9675751 tgtactccctccgtctcaaaatgtaagcaaaaattggtcaacataagttgatgcatctggtacaaattt 9675819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 189
Target Start/End: Original strand, 33822276 - 33822372
Alignment:
Q  94 atgtactcccttcgtcctaaaatgtaagcaaaaattggttaacagaagttgatatatctagtac-caatttgtaccgcatacatcaacttatgttaa 189  Q
    ||||||||| | |||||||||||||||  |||||||| |||||| ||||| |||||| |||| |  |||||||| |  |||||||||||||| ||||    
T  33822276 atgtactccatccgtcctaaaatgtaaataaaaattgattaacaaaagttaatatatttagttcaaaatttgtatcaaatacatcaacttatattaa 33822372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 197
Target Start/End: Complemental strand, 30531299 - 30531196
Alignment:
Q  95 tgtactcccttcgtcctaaaatgtaagcaaaaattggttaacagaagttgatatatctagtaccaa-tttgtaccgcatacatcaacttatgttaactcg 193  Q
    |||||||||| ||||| |||||||||||||||||   | |||| |||||||| ||| | |||| || |||| |||  ||||||||||||||||| || ||    
T  30531299 tgtactccctccgtcccaaaatgtaagcaaaaatgactcaacataagttgatgtatttggtacaaactttgaaccaaatacatcaacttatgttgacccg 30531200  T
Q  194 tttt 197  Q
    ||||    
T  30531199 tttt 30531196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 163
Target Start/End: Complemental strand, 31323933 - 31323867
Alignment:
Q  97 tactcccttcgtcctaaaatgtaagcaaaaattggttaacagaagttgatatatctagtaccaattt 163  Q
    ||||||||  |||| ||||||||||||||||| ||| |||| |||||||| ||||| |||| |||||    
T  31323933 tactccctctgtcccaaaatgtaagcaaaaataggtcaacataagttgatgtatctggtacaaattt 31323867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 187
Target Start/End: Original strand, 31323820 - 31323896
Alignment:
Q  112 aaaatgtaagcaaaaattggttaacagaagttgatatatctagtac-caatttgtaccgcatacatcaacttatgtt 187  Q
    ||||||||||||||||||||| |||| ||||| || ||| | || |  ||||||||||  |||||||||||||||||    
T  31323820 aaaatgtaagcaaaaattggtcaacaaaagttaatgtattttgttcaaaatttgtaccagatacatcaacttatgtt 31323896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University