View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11836_high_32 (Length: 298)

Name: NF11836_high_32
Description: NF11836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11836_high_32
NF11836_high_32
[»] chr4 (1 HSPs)
chr4 (18-298)||(40447402-40447682)


Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 40447402 - 40447682
Alignment:
Q  18 gataaccaagagatgaagtttctctatttctctatatacattcaccatcactgccttatctttctcacagaggattcggatcagcacattcttccccgac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40447402 gataaccaagagatgaagtttctctatttctctatatacattcaccatcactgccttatctttctcacagaggattcggatcagcacattcttccccgac 40447501  T
Q  118 aagctagcttcaacttcaggcagtgacagatttgtttttgatgtttcatcagagtttccattacatgaatttgacgaagtgtccgaaacatcttcatctg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40447502 aagctagcttcaacttcaggcagtgacagatttgtttttgatgtttcatcagagtttccattacatgaatttgacgaagtgtccgaaacatcttcatctg 40447601  T
Q  218 aagacagttcagacagtttcttcacaaccacaactggttctacacttttactttgctcctccaacattttcacttgctcct 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40447602 aagacagttcagacagtttcttcacaaccacaactggttctacacttttactttgctcctccaacattttcacttgctcct 40447682  T

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