View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11836_high_39 (Length: 253)
Name: NF11836_high_39
Description: NF11836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11836_high_39 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 10 - 253
Target Start/End: Complemental strand, 29784104 - 29783862
Alignment:
| Q |
10 |
atgagatgaacgaataaaagcatgcttagaaaataaaaaccttgtaataaaatttgttataaagatattagaacatgtccgttatttaaaaaacagtggg |
109 |
Q |
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| T |
29784104 |
atgacatgaacgaataaaagcatgcttagaaaataaaaaccttgtaattaaatttgttataaagatattagaatatgtcccttatttaaaaa-cagtggg |
29784006 |
T |
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| Q |
110 |
gccattaacttctattgttttctgttttcatttttactaacaaaataaacattagagaagtattaagattttgaaaatgcatttgaaaatagattgaata |
209 |
Q |
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| T |
29784005 |
gccatttacttctattgttttctgttttcatttttactaacaaaataaacattagagaagtattaagattttgaaaatgcatttgaaaatagattgaata |
29783906 |
T |
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| Q |
210 |
tttagaattccgcaaactttgaaagcattgttttcggtatttct |
253 |
Q |
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| T |
29783905 |
tttagaattcggcaaactttgaaagcattgttttcggtatttct |
29783862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 10 - 253
Target Start/End: Complemental strand, 29788111 - 29787869
Alignment:
| Q |
10 |
atgagatgaacgaataaaagcatgcttagaaaataaaaaccttgtaataaaatttgttataaagatattagaacatgtccgttatttaaaaaacagtggg |
109 |
Q |
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| T |
29788111 |
atgacatgaacgaataaaagcatgcttagaaaataaaaaccttgtaattaaatttgttataaagatattagaatatgtcccttatttaaaaa-cagtggg |
29788013 |
T |
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| Q |
110 |
gccattaacttctattgttttctgttttcatttttactaacaaaataaacattagagaagtattaagattttgaaaatgcatttgaaaatagattgaata |
209 |
Q |
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| T |
29788012 |
gccatttacttctattgttttctgttttcatttttactaacaaaataaacattagagaagtattaagattttgaaaatgcatttgaaaatagattgaata |
29787913 |
T |
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| Q |
210 |
tttagaattccgcaaactttgaaagcattgttttcggtatttct |
253 |
Q |
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| T |
29787912 |
tttagaattcggcaaactttgaaagcattgttttcggtatttct |
29787869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 42636127 - 42636159
Alignment:
| Q |
180 |
ttgaaaatgcatttgaaaatagattgaatattt |
212 |
Q |
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| T |
42636127 |
ttgaaaatgcatttcaaaatagattgaatattt |
42636159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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