View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11836_high_45 (Length: 203)
Name: NF11836_high_45
Description: NF11836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11836_high_45 |
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Alignment Details
Target: chr6 (Bit Score: 161; Significance: 5e-86; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 11 - 187
Target Start/End: Complemental strand, 2678231 - 2678055
Alignment:
| Q |
11 |
aggagcagagaagttgggattgaaacaaggcttagctaaaggcttagccataggaagcaatggtgttgtttttgctatatggtcctttatgtccttttat |
110 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2678231 |
aggatcagtgaagttgggattgaaacaaggcttagctaaaggcttggccataggaagcaatggtgttgtttttgctatatggtcctttatgtccttttat |
2678132 |
T |
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| Q |
111 |
ggtagcagaatggtcatgtatcatggtgctaaaggtggtactgtatttgcggttggagcatcattagcacttggtgg |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2678131 |
ggtagcagaatggtcatgtatcatggtgctaaaggtggtactgtatttgctgttggagcatcattagcacttggtgg |
2678055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 11 - 187
Target Start/End: Original strand, 2619154 - 2619330
Alignment:
| Q |
11 |
aggagcagagaagttgggattgaaacaaggcttagctaaaggcttagccataggaagcaatggtgttgtttttgctatatggtcctttatgtccttttat |
110 |
Q |
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|||| ||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||| ||||||| || ||| ||| |||| |
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| T |
2619154 |
aggatcagtgaaattgggattgaaacaaggcttagctaaaggcttaggcataggaagcaatggtcttctttttgctgtatggtctttgatggcctattat |
2619253 |
T |
|
| Q |
111 |
ggtagcagaatggtcatgtatcatggtgctaaaggtggtactgtatttgcggttggagcatcattagcacttggtgg |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||| |
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| T |
2619254 |
ggtagcagaatggtcatgtatcatggtgctaaaggtggtactgtatttgctgttggatattcaatagcacttggtgg |
2619330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 20 - 151
Target Start/End: Complemental strand, 2601223 - 2601092
Alignment:
| Q |
20 |
gaagttgggattgaaacaaggcttagctaaaggcttagccataggaagcaatggtgttgtttttgctatatggtcctttatgtccttttatggtagcaga |
119 |
Q |
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| T |
2601223 |
gaagttgggattgaaacaaggcttagctaaaggcttaggcataggaagcaatggtcttgtttttgccgtatggtcgttgatgtcctattatggtagcaga |
2601124 |
T |
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| Q |
120 |
atggtcatgtatcatggtgctaaaggtggtac |
151 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
2601123 |
atggtcatgtatcatggtgctaaaggtggtac |
2601092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 11 - 187
Target Start/End: Complemental strand, 2646013 - 2645837
Alignment:
| Q |
11 |
aggagcagagaagttgggattgaaacaaggcttagctaaaggcttagccataggaagcaatggtgttgtttttgctatatggtcctttatgtccttttat |
110 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||| || |||||| | | |||| |
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| T |
2646013 |
aggatcagtgaagttgggattgaaacaaggcttagctaaaggttttgccataggaagcaatggtgttgtttttgcaatagcttcttttatgacttattat |
2645914 |
T |
|
| Q |
111 |
ggtagcagaatggtcatgtatcatggtgctaaaggtggtactgtatttgcggttggagcatcattagcacttggtgg |
187 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| | | |||||||| || |||||||||||||| |
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| T |
2645913 |
ggtagcagaatggtcatgtatcatggtgctaaaggtggtactgtttataatgttggagcttccttagcacttggtgg |
2645837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 11 - 151
Target Start/End: Original strand, 2585463 - 2585603
Alignment:
| Q |
11 |
aggagcagagaagttgggattgaaacaaggcttagctaaaggcttagccataggaagcaatggtgttgtttttgctatatggtcctttatgtccttttat |
110 |
Q |
| |
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|||| ||| ||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||| ||||||||||||||| |||||| | | |||| |
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| T |
2585463 |
aggatcagtgaagttgggattgaaacaaggtttagctaagggcttggccataggaagcaatggtgttaattttgctatatggtcttttatggcatattat |
2585562 |
T |
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| Q |
111 |
ggtagcagaatggtcatgtatcatggtgctaaaggtggtac |
151 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||| |
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| T |
2585563 |
ggtagcagaatggttatgtatcatggtgctaaaggtggtac |
2585603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 11 - 154
Target Start/End: Complemental strand, 2573753 - 2573610
Alignment:
| Q |
11 |
aggagcagagaagttgggattgaaacaaggcttagctaaaggcttagccataggaagcaatggtgttgtttttgctatatggtcctttatgtccttttat |
110 |
Q |
| |
|
|||| ||| ||| |||||||||||||||||||| || |||||| ||| |||||||||||||||| ||||||||||| ||||||| || ||||| | |||| |
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| T |
2573753 |
aggatcagtgaaattgggattgaaacaaggcttggcgaaaggcataggcataggaagcaatggtcttgtttttgctgtatggtctttgatgtcatattat |
2573654 |
T |
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| Q |
111 |
ggtagcagaatggtcatgtatcatggtgctaaaggtggtactgt |
154 |
Q |
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| T |
2573653 |
ggtagcagaatggtcatgtatcatggtgctaaaggtggtactgt |
2573610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 30 - 187
Target Start/End: Original strand, 2431993 - 2432150
Alignment:
| Q |
30 |
ttgaaacaaggcttagctaaaggcttagccataggaagcaatggtgttgtttttgctatatggtcctttatgtccttttatggtagcagaatggtcatgt |
129 |
Q |
| |
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||||||||||| || ||||||||||||||||||||||||||||||||||| | |||||||||||| || || | || |||||||||| ||||||||||| |
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| T |
2431993 |
ttgaaacaaggtttggctaaaggcttagccataggaagcaatggtgttgtctatgctatatggtctttaatattctactatggtagcataatggtcatgt |
2432092 |
T |
|
| Q |
130 |
atcatggtgctaaaggtggtactgtatttgcggttggagcatcattagcacttggtgg |
187 |
Q |
| |
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|||||||||||||||| ||||| ||||||| ||||||| | |||||||| ||||||| |
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| T |
2432093 |
atcatggtgctaaaggcggtacagtatttgtagttggagtaacattagcaattggtgg |
2432150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 11 - 165
Target Start/End: Original strand, 2448009 - 2448163
Alignment:
| Q |
11 |
aggagcagagaagttgggattgaaacaaggcttagctaaaggcttagccataggaagcaatggtgttgtttttgctatatggtcctttatgtccttttat |
110 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||| | |||||||||||| ||||||||||||| | |||| | | | ||||| |||||||| | |||| |
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| T |
2448009 |
aggatcagtgaagttgggattgaaacaaggcttggttaaaggcttagctataggaagcaatgctattgtgtatattcaatggtgttttatgtcatattat |
2448108 |
T |
|
| Q |
111 |
ggtagcagaatggtcatgtatcatggtgctaaaggtggtactgtatttgcggttg |
165 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2448109 |
ggtagtagaatggtcatgtatcatggtgctaaaggtggtactgtatttgcagttg |
2448163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 24 - 172
Target Start/End: Complemental strand, 17874351 - 17874203
Alignment:
| Q |
24 |
ttgggattgaaacaaggcttagctaaaggcttagccataggaagcaatggtgttgtttttgctatatggtcctttatgtccttttatggtagcagaatgg |
123 |
Q |
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||||| || |||||||| ||||||||||| ||||| || ||||||||||||||||| ||||| || |||||||| |||| || ||||||||||| | ||| |
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| T |
17874351 |
ttgggtttaaaacaaggattagctaaaggtttagcaattggaagcaatggtgttgtctttgcaatttggtccttcatgtgctattatggtagcaaattgg |
17874252 |
T |
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| Q |
124 |
tcatgtatcatggtgctaaaggtggtactgtatttgcggttggagcatc |
172 |
Q |
| |
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| |||||||||||||||||||| || || || ||||| ||||||||||| |
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| T |
17874251 |
ttatgtatcatggtgctaaaggagggacagtttttgcagttggagcatc |
17874203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 3e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 24 - 123
Target Start/End: Original strand, 33801858 - 33801957
Alignment:
| Q |
24 |
ttgggattgaaacaaggcttagctaaaggcttagccataggaagcaatggtgttgtttttgctatatggtcctttatgtccttttatggtagcagaatgg |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||| ||||||| || ||| ||| ||||||||||||||||| |
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| T |
33801858 |
ttgggattgaaacaaggcttagctaaaggcttaagcataggaagcaatggtcttctttttgctgtatggtctttgatggcctattatggtagcagaatgg |
33801957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 8e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 24 - 123
Target Start/End: Complemental strand, 53664775 - 53664676
Alignment:
| Q |
24 |
ttgggattgaaacaaggcttagctaaaggcttagccataggaagcaatggtgttgtttttgctatatggtcctttatgtccttttatggtagcagaatgg |
123 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||| |||||| || |||||||| ||||||| || ||| ||| ||||||||||||||||| |
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| T |
53664775 |
ttgggattgaaacaaggcttagctaaaggcttaagcataggaagtaatggtcttctttttgctgtatggtctttgatggcctattatggtagcagaatgg |
53664676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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