View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11836_high_5 (Length: 660)
Name: NF11836_high_5
Description: NF11836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11836_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 574; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 20 - 605
Target Start/End: Original strand, 13426606 - 13427191
Alignment:
| Q |
20 |
tatgttgcacaagtgatcccaattacaagacaaatatcacaacaaatgaaaaatttctacctagacaaaatggagatcttaccataatgtatgatgtgat |
119 |
Q |
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| T |
13426606 |
tatgttgcacaagtgatcccaattacaagacaaatatcacaacaaatgaaaaatttctacctagacaaaatggagatcttaccataatgtatgatgtgat |
13426705 |
T |
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| Q |
120 |
caaagcatacaattccaattactgggcagaggtaacaatttcaaatcacaacccactaggccgtcttgacaattggaaattaagctggaattggaccaat |
219 |
Q |
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| T |
13426706 |
caaagcatacaattccaattattgggcagaggtcacaatttcaaatcacaaccctctaggccgtcttgacaattggaaattaagctggaattggaccaat |
13426805 |
T |
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| Q |
220 |
gatgaatttatccacacaatgaaaggtgcttatccatcaaatatagattcatctaactgtatttttggttcacaaggtgaattttacaaggaacttgact |
319 |
Q |
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| T |
13426806 |
gatgaatttatccacacaatgaaaggtgcttatccatcaaatatagattcatctaactgtatttttggttcacaaggtgaattttacaaggaacttgact |
13426905 |
T |
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| Q |
320 |
tttccaatgtattgaattgtgaaaaaagaccaacaataattgatctaccaccaacaaggttcaatgatacacaacttggtaaagtaccattttgttgtag |
419 |
Q |
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| T |
13426906 |
tttccaatgtattgaattgtgaaaaaagaccaacaataattgatctaccaccaacaaggttcaatgatacacaacttggtaaagtaccattttgttgtag |
13427005 |
T |
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| Q |
420 |
gaatggtactctattaccaccttatatggacctcaccatgtcaatttcaaggtttcaaatacaagtttataaaatgccaccacatctcaaccggtcaagc |
519 |
Q |
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| T |
13427006 |
gaatggtactctattaccaccttatatggacctcaccatgtcaatttcaaggtttcaaatacaagtttataaaatgccaccacatctcaaccggtcaagc |
13427105 |
T |
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| Q |
520 |
cttacaccaccacaaaattgggagattaaaggtgatacaatcaaccccgattacaaatgtggggcgccgattaggattagtcctag |
605 |
Q |
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| T |
13427106 |
cttacaccaccacaaaattgggagattaaaggtgatacaatcaaccccgattacaaatgtggggcgccgattaggattagtcctag |
13427191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 152
Target Start/End: Complemental strand, 50130639 - 50130509
Alignment:
| Q |
22 |
tgttgcacaagtgatcccaattacaagacaaatatcacaacaaatgaaaaatttctacctagacaaaatggagatcttaccataatgtatgatgtgatca |
121 |
Q |
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| T |
50130639 |
tgttgcacaagagatcctaagttcaaagcaaacatcactacagatgaaaagtttctgccgcgtcaaaatggcgatcttacgatcatgtatgatgtgatta |
50130540 |
T |
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| Q |
122 |
aagcatacaattccaattactgggcagaggt |
152 |
Q |
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| T |
50130539 |
gatcctatgattcaaattactgggcagaggt |
50130509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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