View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11836_high_6 (Length: 621)
Name: NF11836_high_6
Description: NF11836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11836_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 567; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 16 - 606
Target Start/End: Original strand, 45746085 - 45746675
Alignment:
| Q |
16 |
acatcactactacttcccattaatcccattggtgaactaataccaggcattgagcgaccatctccaagatcaagtcccattggcaaaggattgccgaggg |
115 |
Q |
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| T |
45746085 |
acatcactactacttcccatcaatcccattggtgaactaataccaggcattgagcgaccatctccaagatcaagtcccattggcaaaggattgccgaggg |
45746184 |
T |
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| Q |
116 |
agcttgaaccaccaccaaaaccgttccttccaataccaagttccagaccagaatttgaggttggtagagccatgggattagccaatgatgatattggttt |
215 |
Q |
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| T |
45746185 |
agcttgaaccaccaccaaaaccattccttccaataccaagttccagaccagaatttgaggttggtagagccatgggattagccaatgatgatattggttt |
45746284 |
T |
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| Q |
216 |
gccaaggaacttgtttgttaaggcacatatacggttcaattcgtcctttagacgagcgttttcaattctaatctggtgctcttcaaacaatatttggcca |
315 |
Q |
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| T |
45746285 |
gccaaggaacttgtttgttaaggcgcatatacggttcaattcatcctttagacgagcgttttcaattctaatctggtgctcttcaaacaatatttggcca |
45746384 |
T |
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| Q |
316 |
ggaattgctggtccaccacagttgttacatattggattcaccattgcttctttcatcatgctattctcccctcttagcttgtcattttcctgcctaagca |
415 |
Q |
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| T |
45746385 |
ggaattgctggtccaccacagttgttacatattggattcaccattgcttctttcatcatgctattctcccctcttagcttgtcattttcctgcctaagca |
45746484 |
T |
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| Q |
416 |
ttatgttctcatgcctttccagttgagtctgattcaacaaaaacaaagtcagttaattgttacaaattacagtatctatattaatacaaatgcaataact |
515 |
Q |
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| T |
45746485 |
ttatgttctcatgcctttccagttgagtctgattcaacaaaaacaaagtcagttaattgttacaaattacagtatctatattaatacaaatgcaataact |
45746584 |
T |
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| Q |
516 |
gttgtgtttaacaagtttttaaatcaaatttgtaatctttgatattatggagaatcacaaacaaaagcagcttaggcaaccttgttgtgga |
606 |
Q |
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| T |
45746585 |
gttgtgtttaacaagtttttaaatcacatttgtaatctttgatattatggagaatcacaaacaaaagcggcttaggcaaccttgttgtgga |
45746675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 377 - 445
Target Start/End: Original strand, 12326862 - 12326930
Alignment:
| Q |
377 |
tattctcccctcttagcttgtcattttcctgcctaagcattatgttctcatgcctttccagttgagtct |
445 |
Q |
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| T |
12326862 |
tattctcagctctaagcttatcattctcttgcctaagcaaattgttctcatgcctttccaattgagtct |
12326930 |
T |
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