View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11836_high_8 (Length: 572)

Name: NF11836_high_8
Description: NF11836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11836_high_8
NF11836_high_8
[»] chr1 (3 HSPs)
chr1 (94-339)||(18972288-18972529)
chr1 (246-280)||(21446251-21446285)
chr1 (250-278)||(51703498-51703526)
[»] chr2 (1 HSPs)
chr2 (443-553)||(41580132-41580247)
[»] chr5 (1 HSPs)
chr5 (249-279)||(7927351-7927381)
[»] chr8 (1 HSPs)
chr8 (247-280)||(33656110-33656143)
[»] chr4 (2 HSPs)
chr4 (247-280)||(39829816-39829849)
chr4 (251-279)||(52697481-52697509)
[»] chr7 (1 HSPs)
chr7 (251-279)||(32919025-32919053)
[»] chr6 (2 HSPs)
chr6 (251-279)||(30945821-30945849)
chr6 (252-280)||(31417340-31417368)
[»] chr3 (2 HSPs)
chr3 (247-279)||(38359351-38359383)
chr3 (248-280)||(52431233-52431265)


Alignment Details
Target: chr1 (Bit Score: 121; Significance: 1e-61; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 94 - 339
Target Start/End: Original strand, 18972288 - 18972529
Alignment:
Q  94 tatttttctttcacttgttcgtggtgggagacctatcaagctctctcattctaggctgagccttgaactaacttactagactaaaccggttaacaattct 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||  |||| ||||||||||||  |||| |||  ||  |||||||||||||  ||    
T  18972288 tatttttctttcacttgttcgtggtgggagacctatcaagctcttccaccctagactgagccttgaa--aactaactt-accgaaccggttaacaagcct 18972384  T
Q  194 agtttatgcatgttatagcttttgaatatggaaaaattcttgtaatttcacctataaaagagaaatgatatttatacaatcatttt-aaacaactctctc 292  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||| || ||  |||||| ||||||||||||||||||| | |||||| | ||    
T  18972385 agtttatgcatgttatagcttttgaatatggaaaaattctagtgatttcaccaatgaa--agaaattatatttatacaatcattttgatacaactttttc 18972482  T
Q  293 atgttctcattatgttctctatatatccttaatatattaaagtaaaa 339  Q
    |||||||||||||||||||| |||| ||| |||||||||||||||||    
T  18972483 atgttctcattatgttctctctataacctaaatatattaaagtaaaa 18972529  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 246 - 280
Target Start/End: Complemental strand, 21446285 - 21446251
Alignment:
Q  246 tataaaagagaaatgatatttatacaatcatttta 280  Q
    |||| ||||||||||||||||||||||||||||||    
T  21446285 tatataagagaaatgatatttatacaatcatttta 21446251  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 278
Target Start/End: Complemental strand, 51703526 - 51703498
Alignment:
Q  250 aaagagaaatgatatttatacaatcattt 278  Q
    |||||||||||||||||||||||||||||    
T  51703526 aaagagaaatgatatttatacaatcattt 51703498  T

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Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 443 - 553
Target Start/End: Original strand, 41580132 - 41580247
Alignment:
Q  443 taggtgcaaaagagaagaaagcatagccctaccccacattccgttgcatgaaatggataagtgacag-----ttctattataaacatcaagggctgtttt 537  Q
    ||||||||||||||||||| ||||| ||||||||||||||  |||||||||||| || |||||||||     || |||||||| ||||||||||||||||    
T  41580132 taggtgcaaaagagaagaaggcataaccctaccccacattatgttgcatgaaattgagaagtgacagtgctattgtattataaccatcaagggctgtttt 41580231  T
Q  538 ggttgtgtgggattat 553  Q
    ||||||||||||||||    
T  41580232 ggttgtgtgggattat 41580247  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 279
Target Start/End: Original strand, 7927351 - 7927381
Alignment:
Q  249 aaaagagaaatgatatttatacaatcatttt 279  Q
    |||||||||||||||||||||||||||||||    
T  7927351 aaaagagaaatgatatttatacaatcatttt 7927381  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 280
Target Start/End: Original strand, 33656110 - 33656143
Alignment:
Q  247 ataaaagagaaatgatatttatacaatcatttta 280  Q
    |||||||| |||||||||||||||||||||||||    
T  33656110 ataaaagataaatgatatttatacaatcatttta 33656143  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 280
Target Start/End: Complemental strand, 39829849 - 39829816
Alignment:
Q  247 ataaaagagaaatgatatttatacaatcatttta 280  Q
    |||||||||| |||||||||||||||||||||||    
T  39829849 ataaaagagagatgatatttatacaatcatttta 39829816  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 251 - 279
Target Start/End: Original strand, 52697481 - 52697509
Alignment:
Q  251 aagagaaatgatatttatacaatcatttt 279  Q
    |||||||||||||||||||||||||||||    
T  52697481 aagagaaatgatatttatacaatcatttt 52697509  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 251 - 279
Target Start/End: Complemental strand, 32919053 - 32919025
Alignment:
Q  251 aagagaaatgatatttatacaatcatttt 279  Q
    |||||||||||||||||||||||||||||    
T  32919053 aagagaaatgatatttatacaatcatttt 32919025  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 251 - 279
Target Start/End: Original strand, 30945821 - 30945849
Alignment:
Q  251 aagagaaatgatatttatacaatcatttt 279  Q
    |||||||||||||||||||||||||||||    
T  30945821 aagagaaatgatatttatacaatcatttt 30945849  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 280
Target Start/End: Complemental strand, 31417368 - 31417340
Alignment:
Q  252 agagaaatgatatttatacaatcatttta 280  Q
    |||||||||||||||||||||||||||||    
T  31417368 agagaaatgatatttatacaatcatttta 31417340  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 247 - 279
Target Start/End: Complemental strand, 38359383 - 38359351
Alignment:
Q  247 ataaaagagaaatgatatttatacaatcatttt 279  Q
    |||||||||||||||||||| ||||||||||||    
T  38359383 ataaaagagaaatgatatttgtacaatcatttt 38359351  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 248 - 280
Target Start/End: Complemental strand, 52431265 - 52431233
Alignment:
Q  248 taaaagagaaatgatatttatacaatcatttta 280  Q
    |||||||||||| ||||||||||||||||||||    
T  52431265 taaaagagaaataatatttatacaatcatttta 52431233  T

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