View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11836_low_10 (Length: 551)
Name: NF11836_low_10
Description: NF11836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11836_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 17 - 541
Target Start/End: Complemental strand, 46471754 - 46471243
Alignment:
| Q |
17 |
actaatgactcccacaattagtaatatttcatttttagacctgcttttaaattgaaaaacatttttccttcaaaaagacagaatcctggcattagatact |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46471754 |
actaatgactcccacaattagtaatatttcatttttaggcctgcttttaaattgaaaaacatttttccttcaaaaagacagaatcctggcattagatact |
46471655 |
T |
|
| Q |
117 |
caagcacaggcacacacacaataccattcataaagtgtatgcaagttaaaggaactcacggtggagtcaggcacttcatatttgtagacttgattatgtg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46471654 |
caagcacaggcacacacacaataccattcataaagtgtatgcaagttaaaggaactcacggtggagtcaggcacttcatatttgtagacttga------- |
46471562 |
T |
|
| Q |
217 |
gcctagaatctccctctcatcttgtaatactgtattttcagcaacctataacataaaataaggttaatgcggaaatatgtattctgagtgcatatcccta |
316 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46471561 |
-------atctccctctcatcttgtaatactgtatttacagcaacctataacataaaataaggttaatgcggaaatatgtattctgagtgcatatcccta |
46471469 |
T |
|
| Q |
317 |
tcacatttatgtttcttgatgatggctaatttcggcatcataccaatactaaaactatagatattaatctaatagaatgacatttacaatatgagtttgt |
416 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46471468 |
tcacatttatgtttcttgatgatggccaatttcggcatcataccaatactaaaactatagatattaatctaatagaatgacatttacaatatgagtttgt |
46471369 |
T |
|
| Q |
417 |
cccaattctaatcaggaaaccgagtataacccaaggttctaagcaggaaactccaaaaattacagt-gagtaatgagtatagctctaatatgtgaaccgg |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
46471368 |
cccaattctaatcaggaaaccgagtataacccaaggttctaagcaggaaactccaaaaattacagtagagtaatgagtatagctctaatctgtgaaccgg |
46471269 |
T |
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| Q |
516 |
tcatttttggatgaattgcatctctg |
541 |
Q |
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| T |
46471268 |
tcatttttggatgaattgcatctctg |
46471243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 134 - 275
Target Start/End: Complemental strand, 1475311 - 1475170
Alignment:
| Q |
134 |
acaataccattcataaagtgtatgcaagttaaaggaactcacggtggagtcaggcacttcatatttgtagacttgattatgtggcctagaatctccctct |
233 |
Q |
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|||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||| |
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| T |
1475311 |
acaataacagtcataaagtttatgcaagttaaaggaactcacggtggagtcaggcacttcatatttgtagacttgataatgtggcccagaaactccctct |
1475212 |
T |
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| Q |
234 |
catcttgtaatactgtattttcagcaacctataacataaaat |
275 |
Q |
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| T |
1475211 |
cgtcttgcaatactgtatttacagcaacctataacatgaaat |
1475170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 455 - 541
Target Start/End: Complemental strand, 1474954 - 1474869
Alignment:
| Q |
455 |
ctaagcaggaaactccaaaaattacagtgagtaatgagtatagctctaatatgtgaaccggtcatttttggatgaattgcatctctg |
541 |
Q |
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|||||||||||||| ||||||||| || || ||||||| |||||||||| ||||| | ||||||||||||||||||||| |||| |
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| T |
1474954 |
ctaagcaggaaactacaaaaatta-agcaagcaatgagtgtagctctaatctgtgactcaatcatttttggatgaattgcatgtctg |
1474869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 144 - 225
Target Start/End: Original strand, 20743878 - 20743959
Alignment:
| Q |
144 |
tcataaagtgtatgcaagttaaaggaactcacggtggagtcaggcacttcatatttgtagacttgattatgtggcctagaat |
225 |
Q |
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||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
20743878 |
tcataaagtttatgcaagttaaaggaactcacggtggggtcaggcacttcatatttgtagacttgataatgtggcccagaat |
20743959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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