View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11836_low_11 (Length: 548)
Name: NF11836_low_11
Description: NF11836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11836_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 485; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 18 - 538
Target Start/End: Original strand, 54469355 - 54469875
Alignment:
| Q |
18 |
gaaccaagatctaacgtttgagcttatggagacaacaatattgatgttgaacccagaccaagtgccactaaatatgatgcataaatgaaatagaccacta |
117 |
Q |
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| T |
54469355 |
gaaccaagatctaacgtttcagtttatggagacaacaatattgatgttgaacccagaccaagtgccactaaatatgatgcataaatgaaatagaccacta |
54469454 |
T |
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| Q |
118 |
cttcaatctataattaaataagtcattgccgcataatgttcgatgattacttagtatgtatgctgtattaagctttttgaataattgtattcttgtcaag |
217 |
Q |
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| T |
54469455 |
cttcaatctataattaaataagtcattgccgcataatgttcgatgattacttagcatgtatgctgtattaagctttttgaataattgtattcttgtcaag |
54469554 |
T |
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| Q |
218 |
ttaagatatcagtggtggaacttcccgttgtttaccaagaactggacttggacttgtccttggtgaaagggaatgcttcttcgacatcaatatcttcctt |
317 |
Q |
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| T |
54469555 |
ttaagatatcagtggtggaacttcccgttgtttaccaagaactggacttggacttgtccttggtgaaagggaatgcttcttcgacatcaatatcttcctt |
54469654 |
T |
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| Q |
318 |
gatggatgttttaaaatatgggatatttcttttatgaagaatgcatgttagggtattgtttgaagaaataaaagaagcaagcttgtataaaaatgtggtg |
417 |
Q |
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| T |
54469655 |
gatggatgttttaaaatatgggatatttcttttatgaagaatgcatgttagggtattgtttgaagaaataaaagaagcaagcttgtataaaaatgtggtg |
54469754 |
T |
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| Q |
418 |
tgattattacattaataaacttttattttatgaataccgtaattaattttctaaggacgttttttagcatgatcattcatttatatcaatgtacacaaag |
517 |
Q |
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| T |
54469755 |
tgattattacattaataaaattttattttatgaataccgtaattaattttccaaggacgctcgttagcatgatcattcatttatatcaatgtacacaaag |
54469854 |
T |
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| Q |
518 |
ctcgacccttcattactctct |
538 |
Q |
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| T |
54469855 |
ttcgacccttcattactctct |
54469875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 11241830 - 11241882
Alignment:
| Q |
153 |
atgttcgatgattacttagtatgtatgctgtattaagctttttgaataattgt |
205 |
Q |
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| T |
11241830 |
atgttcaatgatcacttagtatgtatgatgtattaagctttttgaataattgt |
11241882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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