View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11836_low_12 (Length: 540)
Name: NF11836_low_12
Description: NF11836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11836_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 53 - 527
Target Start/End: Complemental strand, 36485455 - 36484964
Alignment:
| Q |
53 |
caaaattaatgtactaagtatgtgacaaacac--tatcgagcattaaaatggaaccttactcaattatcgaaatccttctaagtacttaggtgtagtttc |
150 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36485455 |
caaaattaatgtactaagtatgtgacaaacacactatcgagcattaaaatggaaccttactcaattatcgaaatccttctaagtacttaggtgtagtatc |
36485356 |
T |
|
| Q |
151 |
tactcttgaatggaaggaagaacttattcattaggttacaattgagctagatactagtattgattatcatttaattattggatgacaaaaatggatcctt |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36485355 |
tactcttgaatggaaggaagaacttattcattaggttacaattgagctagatactactattgattatcattcaattattggatgacaaaaatggatcctt |
36485256 |
T |
|
| Q |
251 |
actcaaaaatcgaaatccttcttaagaaattaggggtaatttcttc-------------gtagatacnnnnnnnnnnnnnaggtgacaattgaaggtaga |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
36485255 |
actcaaaaatcgaaatccttcttaagaaattaggggtaatttcttctcttgaattgaaagtagatactttttctttttttaggtgacaattgaaggtaga |
36485156 |
T |
|
| Q |
338 |
tattagtattgattatcattcaactattgatggcattattatactttataatttatatgagttgcaaatttttgtacatgaatgtaa--tttttctgaac |
435 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
36485155 |
tattagtattgattatcattcaactattgatggcattattatactttataatttatatgagttgcaaatttttgtatatgaatgtaatttttttctgaac |
36485056 |
T |
|
| Q |
436 |
aacaaaacccccaaaatttaaaaagggtgaagccatcctttcatacagatcatgaataatcttattatctttgatcttccaatgcagtgcct |
527 |
Q |
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| T |
36485055 |
aacaaaacccccaaaatttaaaaagggtgaagccatcctttcatacagatcatgaataatcttattatctttgatcttccaatgcagtgcct |
36484964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 321 - 494
Target Start/End: Complemental strand, 36492923 - 36492760
Alignment:
| Q |
321 |
tgacaattgaaggtagatattagtattgattatcattcaactattgatggcattattatactttataatttatatgagttgcaaatttttgtacatgaat |
420 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||| |||||| || |||||||||| | ||||||||||||| |||||||||||| ||| |
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| T |
36492923 |
tgacaattgaagatagatattagtattgattatcattcaattattgacggtattattatac-------tatatatgagttgcacatttttgtacataaat |
36492831 |
T |
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| Q |
421 |
gtaatttttctgaacaacaaaacccccaaaatttaaaaagggtgaagccatcctttcatacagatcatgaataa |
494 |
Q |
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| T |
36492830 |
ataatttttc-atacaac--aacccccaaaatttaaaacgggtgaagctatacttttatacaaatgatgaataa |
36492760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 96 - 296
Target Start/End: Complemental strand, 36493156 - 36492960
Alignment:
| Q |
96 |
aaaatggaaccttactcaattatcgaaatccttctaagtacttaggtgtagtttctactcttgaatggaaggaagaacttattcattaggttacaattga |
195 |
Q |
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| T |
36493156 |
aaaatggatccttacataattattgaactccttctaagtaattaggcgtaatttcttctcttaaatcaaaggtagaacttctt---taggtgacaattga |
36493060 |
T |
|
| Q |
196 |
-gctagatactagtattgattatcatttaattattggatgacaaaaatggatccttactcaaaaatcgaaatccttcttaagaaattaggggtaatttct |
294 |
Q |
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||||||| || ||||||| ||||||| |||| |||||| |||| ||| |||| ||||||||||| |||||| |||||||||||||| |||||||||| |
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| T |
36493059 |
agctagattcttgtattgactatcattccattaatggatggcaaatatgcatccctactcaaaaattgaaatcgttcttaagaaatta--ggtaatttct |
36492962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 318 - 387
Target Start/End: Complemental strand, 24053293 - 24053223
Alignment:
| Q |
318 |
aggtgacaattgaaggtagatattagtattgattatcattcaact-attgatggcattattatactttata |
387 |
Q |
| |
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||||||| |||||||||||||| || ||||||||||||||||| | || |||| ||||||||||||||||| |
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| T |
24053293 |
aggtgacgattgaaggtagatactaatattgattatcattcaattaatggatgacattattatactttata |
24053223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 207 - 296
Target Start/End: Complemental strand, 24053565 - 24053476
Alignment:
| Q |
207 |
gtattgattatcatttaattattggatgacaaaaatggatccttactcaaaaatcgaaatccttcttaagaaattaggggtaatttcttc |
296 |
Q |
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||||||||||||||| | ||||||||| |||| |||||||||||||| ||| | ||| | ||||||||| |||||| ||||||||||| |
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| T |
24053565 |
gtattgattatcattcagttattggatagcaaatatggatccttactccaaatttgaagtacttcttaagtaattagccgtaatttcttc |
24053476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 172 - 296
Target Start/End: Complemental strand, 36493220 - 36493099
Alignment:
| Q |
172 |
acttattcattaggttacaattga-gctagatactagtattgattatcatttaattattggatgacaaaaatggatccttactcaaaaatcgaaatcctt |
270 |
Q |
| |
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|||| |||||||||| || ||||| || || |||||||||||||||||||| | || ||||||||||||||||||||||| || || ||| ||||| |
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| T |
36493220 |
actttttcattaggtgacgattgaagcaaggtactagtattgattatcattcattt---ggatgacaaaaatggatccttacataattattgaactcctt |
36493124 |
T |
|
| Q |
271 |
cttaagaaattaggggtaatttcttc |
296 |
Q |
| |
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| |||| ||||||| ||||||||||| |
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| T |
36493123 |
c-taagtaattaggcgtaatttcttc |
36493099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 259
Target Start/End: Complemental strand, 24053423 - 24053368
Alignment:
| Q |
204 |
ctagtattgattatcatttaattattggatgacaaaaatggatccttactcaaaaa |
259 |
Q |
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|||||||||||||||||| ||||||||||| | ||||| |||||||||| ||||| |
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| T |
24053423 |
ctagtattgattatcattcaattattggatagcgaaaattgatccttactaaaaaa |
24053368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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