View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11836_low_16 (Length: 498)
Name: NF11836_low_16
Description: NF11836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11836_low_16 |
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| [»] scaffold0019 (1 HSPs) |
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| [»] scaffold0038 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 28180979 - 28180693
Alignment:
| Q |
1 |
aggatgaggagacggatgattgaggcatagccatgagaatagagaataaaaaggaagtaagaatt------------------tggatgagtgtatatat |
82 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28180979 |
aggatgaggagacggatgattgaagcatagccatgagaatagagaataaaaaggaagtaagaatagtatgagaagtaagaatgtggatgagtgtatatat |
28180880 |
T |
|
| Q |
83 |
agggtttcaaaataaatcaagaagtgaaacttaagaggatccattgaccaaagaccatcgtgagttaaacttccttcccattttctatctaccaaataca |
182 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
28180879 |
agggtttcaaaataaatcaagaagtgaaacttaagaggatccattgaccaaagaccatcgtgagttaaacttccttcccatttcctatctaccaaataca |
28180780 |
T |
|
| Q |
183 |
aaagaaaagacaggacaaatcaacgaagacactt---aacttcaacatttcaccgattcaacttaagtttttaataagttgtgctat |
266 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
28180779 |
aaagaaaagacaggacaaatcaacgaagacacttaacaacttcaacatttcaccgattcaacttaagattttaatgagttgtgctat |
28180693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 28185231 - 28184945
Alignment:
| Q |
1 |
aggatgaggagacggatgattgaggcatagccatgagaatagagaataaaaaggaagtaagaatt------------------tggatgagtgtatatat |
82 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28185231 |
aggatgaggagacggatgattgaagcatagccatgagaatagagaataaaaaggaagtaagaatagtatgagaagtaagaatgtggatgagtgtatatat |
28185132 |
T |
|
| Q |
83 |
agggtttcaaaataaatcaagaagtgaaacttaagaggatccattgaccaaagaccatcgtgagttaaacttccttcccattttctatctaccaaataca |
182 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
28185131 |
agggtttcaaaataaatcaagaagtgaaacttaagaggatccattgaccaaagaccatcgtgagttaaacttccttcccatttcctatctaccaaataca |
28185032 |
T |
|
| Q |
183 |
aaagaaaagacaggacaaatcaacgaagacactt---aacttcaacatttcaccgattcaacttaagtttttaataagttgtgctat |
266 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
28185031 |
aaagaaaagacaggacaaatcaacgaagacacttaacaacttcaacatttcaccgattcaacttaagattttaatgagttgtgctat |
28184945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 284 - 426
Target Start/End: Complemental strand, 28180707 - 28180565
Alignment:
| Q |
284 |
aatgagttgtgctattttaacacacaaattcaacatcaaatttcagtatatcaatttaaatggttagttcacttgtgcttaattacgtttagtgaatggg |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28180707 |
aatgagttgtgctattttaacacacaaattcaacatcaaatttcagtatatcaatttaaatggttagttcacttgtgcttaattacgtttagtgaatggg |
28180608 |
T |
|
| Q |
384 |
taaatggttagaaatttttcgacttaataattattttacacgt |
426 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28180607 |
taaatggttagaaatttttcgacttaataattattttacacgt |
28180565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 284 - 426
Target Start/End: Complemental strand, 28184959 - 28184817
Alignment:
| Q |
284 |
aatgagttgtgctattttaacacacaaattcaacatcaaatttcagtatatcaatttaaatggttagttcacttgtgcttaattacgtttagtgaatggg |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28184959 |
aatgagttgtgctattttaacacacaaattcaacatcaaatttcagtatatcaatttaaatggttagttcacttgtgcttaattacgtttagtgaatggg |
28184860 |
T |
|
| Q |
384 |
taaatggttagaaatttttcgacttaataattattttacacgt |
426 |
Q |
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| T |
28184859 |
taaatggttagaaatttttcgacttaataattattttacacgt |
28184817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 111 - 194
Target Start/End: Complemental strand, 28149429 - 28149345
Alignment:
| Q |
111 |
acttaagaggatccattgaccaaagaccatcgtgagttaaacttccttcccattttctatc-taccaaatacaaaagaaaagaca |
194 |
Q |
| |
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|||| |||||||||| |||||||||||| | |||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
28149429 |
actttagaggatccactgaccaaagaccgttgtgagttaaacttccttcccatttcctatcttaccaaatacaaaagaaaagaca |
28149345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 28234419 - 28234367
Alignment:
| Q |
11 |
gacggatgattgaggcatagccatgagaatagagaataaaaaggaagtaagaa |
63 |
Q |
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||||||||||||| ||| |||||||||| ||||||| |||||||||||||||| |
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| T |
28234419 |
gacggatgattgaagcagagccatgagagtagagaacaaaaaggaagtaagaa |
28234367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 28226807 - 28226754
Alignment:
| Q |
9 |
gagacggatgattgaggcatagccat--gagaatagagaataaaaaggaagtaa |
60 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||| ||||||||||| |
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| T |
28226807 |
gagacggatgattgaagcatagccatatgagaatagagaatagaaaggaagtaa |
28226754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 58612 - 58683
Alignment:
| Q |
9 |
gagacggatgattgaggcatagccatgagaatagagaataaaaaggaagtaagaatttggatgagtgtatat |
80 |
Q |
| |
|
|||| |||||||||| |||||||||||| | ||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
58612 |
gagatggatgattgaagcatagccatgacagtagagaataaaaaggaagtaagaatgtggatgagtgtatat |
58683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 34580 - 34528
Alignment:
| Q |
11 |
gacggatgattgaggcatagccatgagaatagagaataaaaaggaagtaagaa |
63 |
Q |
| |
|
||||||||||||| ||| |||||||||| ||||||| |||||||||||||||| |
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|
| T |
34580 |
gacggatgattgaagcagagccatgagagtagagaacaaaaaggaagtaagaa |
34528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 27305 - 27252
Alignment:
| Q |
9 |
gagacggatgattgaggcatagccat--gagaatagagaataaaaaggaagtaa |
60 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||| ||||||||||| |
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|
| T |
27305 |
gagacggatgattgaagcatagccatatgagaatagagaatagaaaggaagtaa |
27252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 327
Target Start/End: Original strand, 2443403 - 2443443
Alignment:
| Q |
287 |
gagttgtgctattttaacacacaaattcaacatcaaatttc |
327 |
Q |
| |
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|||||||| |||||| ||||| ||||||||||||||||||| |
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|
| T |
2443403 |
gagttgtgttattttgacacaaaaattcaacatcaaatttc |
2443443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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