View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11836_low_17 (Length: 479)

Name: NF11836_low_17
Description: NF11836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11836_low_17
NF11836_low_17
[»] chr2 (11 HSPs)
chr2 (154-478)||(10509090-10509410)
chr2 (11-137)||(10508971-10509097)
chr2 (11-98)||(10464766-10464853)
chr2 (11-86)||(10546918-10546993)
chr2 (11-89)||(10494363-10494441)
chr2 (397-478)||(10495124-10495205)
chr2 (11-91)||(10476044-10476124)
chr2 (142-174)||(15305601-15305633)
chr2 (11-90)||(7478921-7479000)
chr2 (143-175)||(4026762-4026794)
chr2 (11-87)||(10519641-10519717)
[»] chr5 (3 HSPs)
chr5 (141-175)||(35445998-35446032)
chr5 (142-175)||(12554407-12554440)
chr5 (142-174)||(16458072-16458104)
[»] chr1 (4 HSPs)
chr1 (141-175)||(17830097-17830131)
chr1 (141-171)||(37473342-37473372)
chr1 (143-176)||(29904704-29904737)
chr1 (139-171)||(15609033-15609065)
[»] chr8 (2 HSPs)
chr8 (141-175)||(1058167-1058201)
chr8 (142-174)||(32976004-32976036)
[»] chr6 (2 HSPs)
chr6 (141-175)||(8147645-8147679)
chr6 (142-174)||(30536422-30536454)
[»] chr4 (3 HSPs)
chr4 (141-175)||(31851397-31851431)
chr4 (143-175)||(42321972-42322004)
chr4 (142-174)||(43505900-43505932)
[»] chr3 (1 HSPs)
chr3 (141-171)||(20880420-20880450)
[»] chr7 (1 HSPs)
chr7 (142-174)||(45806420-45806452)


Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 154 - 478
Target Start/End: Original strand, 10509090 - 10509410
Alignment:
Q  154 ttatagcaaatgataaaataaataaagttataccttgtagtgtttcctccagttgaagaaggtaacatcagcagggatagaatcggaagttggattgtag 253  Q
    |||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10509090 ttatagcaaatgataaaat----aaagttataccttgtagtgtttcctccagttgaagaaggtaacatcagcagggatagaatcggaagttggattgtag 10509185  T
Q  254 atccatttacagtgagaatgggagtcaccttccttcaagttcaaatccctacgagtactcttccatgactcttgtttgacaaaagattcatagtattttt 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10509186 atccatttacagtgagaatgggagtcaccttccttcaagttcaaatccctacgagtactcttccatgactcttgtttgacaaaagattcatagtattttt 10509285  T
Q  354 cacttttcagaacttgttttctagcttcctccatctgttcgagatcaccggtgtagagccagtatctctcagtaatcctcaccttggaaggatcaaggag 453  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  10509286 cacttttcagaacttgttttctagcttcctccatctgttcgagatcaccggtgtagagccagtatctctcagtcatcctcaccttggaaggatcaaggag 10509385  T
Q  454 accagagatccagatgtttcgaatc 478  Q
    |||||||||||||||||||||||||    
T  10509386 accagagatccagatgtttcgaatc 10509410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 11 - 137
Target Start/End: Original strand, 10508971 - 10509097
Alignment:
Q  11 caaaggcacgcagagcattgtcaacctcaggagtgaaatcaacacaagaaggtgtgtcaattacgctcatctgcaaggacagacaaatgatgaagaatag 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10508971 caaaggcacgcagagcattgtcaacctcaggagtgaaatcaacacaagcaggtgtgtcaattacgctcatctgcaaggacagaaaaatgatgaagaatag 10509070  T
Q  111 gcatgcttggataaacagcttatagca 137  Q
    |||||||||||||||||||||||||||    
T  10509071 gcatgcttggataaacagcttatagca 10509097  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 10464766 - 10464853
Alignment:
Q  11 caaaggcacgcagagcattgtcaacctcaggagtgaaatcaacacaagaaggtgtgtcaattacgctcatctgcaaggacagacaaat 98  Q
    ||||||||||||| ||||| | ||||||||||||||||||||||  |  |||||||||||||||  ||||||||||||||||||||||    
T  10464766 caaaggcacgcagcgcattctgaacctcaggagtgaaatcaacatgatcaggtgtgtcaattacagtcatctgcaaggacagacaaat 10464853  T

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Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 10546918 - 10546993
Alignment:
Q  11 caaaggcacgcagagcattgtcaacctcaggagtgaaatcaacacaagaaggtgtgtcaattacgctcatctgcaa 86  Q
    |||||||||| |||||||| |||||||||| |||||| |||||||||  |||||||||||||||||||||||||||    
T  10546918 caaaggcacgtagagcattatcaacctcagaagtgaagtcaacacaatcaggtgtgtcaattacgctcatctgcaa 10546993  T

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Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 10494363 - 10494441
Alignment:
Q  11 caaaggcacgcagagcattgtcaacctcaggagtgaaatcaacacaagaaggtgtgtcaattacgctcatctgcaagga 89  Q
    ||||||||| ||||||||| | |||||||| |||||||||||||| || |||||||||||| ||| |||||||||||||    
T  10494363 caaaggcacacagagcattcttaacctcagtagtgaaatcaacacgagcaggtgtgtcaatcacggtcatctgcaagga 10494441  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 397 - 478
Target Start/End: Original strand, 10495124 - 10495205
Alignment:
Q  397 atcaccggtgtagagccagtatctctcagtaatcctcaccttggaaggatcaaggagaccagagatccagatgtttcgaatc 478  Q
    |||||||| ||| ||||||||||||||||| |||||||  | ||||||||| | ||||||||| ||||||| ||| ||||||    
T  10495124 atcaccggcgtatagccagtatctctcagtcatcctcatttcggaaggatccaagagaccagatatccagacgttgcgaatc 10495205  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 91
Target Start/End: Original strand, 10476044 - 10476124
Alignment:
Q  11 caaaggcacgcagagcattgtcaacctcaggagtgaaatcaacacaagaaggtgtgtcaattacgctcatctgcaaggaca 91  Q
    ||||||||||||||||||| | |||||||| |||||||||||||  |  |||||||||||  || ||||||||||| ||||    
T  10476044 caaaggcacgcagagcattctgaacctcagcagtgaaatcaacattatcaggtgtgtcaagcacactcatctgcaatgaca 10476124  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 174
Target Start/End: Original strand, 15305601 - 15305633
Alignment:
Q  142 cataagctatttttatagcaaatgataaaataa 174  Q
    |||||||||||||||||||||||||||||||||    
T  15305601 cataagctatttttatagcaaatgataaaataa 15305633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 7479000 - 7478921
Alignment:
Q  11 caaaggcacgcagagcattgtcaacctcaggagtgaaatcaacacaagaaggtgtgtcaattacgctcatctgcaaggac 90  Q
    |||||||| |||||||| | | |||||||| |||||||||||||  |  |||||||||||| ||  ||||||||||||||    
T  7479000 caaaggcaggcagagcactcttaacctcagcagtgaaatcaacatgaacaggtgtgtcaatcacagtcatctgcaaggac 7478921  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 143 - 175
Target Start/End: Original strand, 4026762 - 4026794
Alignment:
Q  143 ataagctatttttatagcaaatgataaaataaa 175  Q
    ||||||||||||||||||||| |||||||||||    
T  4026762 ataagctatttttatagcaaaagataaaataaa 4026794  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 10519641 - 10519717
Alignment:
Q  11 caaaggcacgcagagcattgtcaacctcaggagtgaaatcaacacaagaaggtgtgtcaattacgctcatctgcaag 87  Q
    ||||||||| ||||||||| | ||| ||||  |||||||||| ||||  || |||||| |||| |||||||||||||    
T  10519641 caaaggcacccagagcattcttaacttcagaggtgaaatcaaaacaattagttgtgtccattatgctcatctgcaag 10519717  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 175
Target Start/End: Original strand, 35445998 - 35446032
Alignment:
Q  141 acataagctatttttatagcaaatgataaaataaa 175  Q
    |||||||||||||||||||||||||||||||||||    
T  35445998 acataagctatttttatagcaaatgataaaataaa 35446032  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 175
Target Start/End: Original strand, 12554407 - 12554440
Alignment:
Q  142 cataagctatttttatagcaaatgataaaataaa 175  Q
    |||||||||||||||||| |||||||||||||||    
T  12554407 cataagctatttttatagtaaatgataaaataaa 12554440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 174
Target Start/End: Complemental strand, 16458104 - 16458072
Alignment:
Q  142 cataagctatttttatagcaaatgataaaataa 174  Q
    |||||||||||||||||||||| ||||||||||    
T  16458104 cataagctatttttatagcaaaagataaaataa 16458072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 175
Target Start/End: Original strand, 17830097 - 17830131
Alignment:
Q  141 acataagctatttttatagcaaatgataaaataaa 175  Q
    |||||||||||||||||||||||||||||||||||    
T  17830097 acataagctatttttatagcaaatgataaaataaa 17830131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 171
Target Start/End: Original strand, 37473342 - 37473372
Alignment:
Q  141 acataagctatttttatagcaaatgataaaa 171  Q
    |||||||||||||||||||||||||||||||    
T  37473342 acataagctatttttatagcaaatgataaaa 37473372  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 176
Target Start/End: Original strand, 29904704 - 29904737
Alignment:
Q  143 ataagctatttttatagcaaatgataaaataaat 176  Q
    ||||||||||||||||||||| ||||||||||||    
T  29904704 ataagctatttttatagcaaaagataaaataaat 29904737  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 171
Target Start/End: Original strand, 15609033 - 15609065
Alignment:
Q  139 agacataagctatttttatagcaaatgataaaa 171  Q
    ||||||||||||||||||||||||| |||||||    
T  15609033 agacataagctatttttatagcaaaagataaaa 15609065  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 175
Target Start/End: Complemental strand, 1058201 - 1058167
Alignment:
Q  141 acataagctatttttatagcaaatgataaaataaa 175  Q
    |||||||||||||||||||||||| ||||||||||    
T  1058201 acataagctatttttatagcaaatcataaaataaa 1058167  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 174
Target Start/End: Original strand, 32976004 - 32976036
Alignment:
Q  142 cataagctatttttatagcaaatgataaaataa 174  Q
    |||||||||||||||||||||| ||||||||||    
T  32976004 cataagctatttttatagcaaaagataaaataa 32976036  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 175
Target Start/End: Original strand, 8147645 - 8147679
Alignment:
Q  141 acataagctatttttatagcaaatgataaaataaa 175  Q
    ||||||||||||||||||||||| |||||||||||    
T  8147645 acataagctatttttatagcaaaagataaaataaa 8147679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 174
Target Start/End: Original strand, 30536422 - 30536454
Alignment:
Q  142 cataagctatttttatagcaaatgataaaataa 174  Q
    ||||||||||| |||||||||||||||||||||    
T  30536422 cataagctattattatagcaaatgataaaataa 30536454  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 175
Target Start/End: Original strand, 31851397 - 31851431
Alignment:
Q  141 acataagctatttttatagcaaatgataaaataaa 175  Q
    |||||||||||||||||| ||||||||||||||||    
T  31851397 acataagctatttttataacaaatgataaaataaa 31851431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 143 - 175
Target Start/End: Complemental strand, 42322004 - 42321972
Alignment:
Q  143 ataagctatttttatagcaaatgataaaataaa 175  Q
    |||||||||||||||| ||||||||||||||||    
T  42322004 ataagctatttttataacaaatgataaaataaa 42321972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 174
Target Start/End: Original strand, 43505900 - 43505932
Alignment:
Q  142 cataagctatttttatagcaaatgataaaataa 174  Q
    |||||||||||||||||||||| ||||||||||    
T  43505900 cataagctatttttatagcaaaagataaaataa 43505932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 171
Target Start/End: Original strand, 20880420 - 20880450
Alignment:
Q  141 acataagctatttttatagcaaatgataaaa 171  Q
    |||||||||||||||||||||||||||||||    
T  20880420 acataagctatttttatagcaaatgataaaa 20880450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 174
Target Start/End: Complemental strand, 45806452 - 45806420
Alignment:
Q  142 cataagctatttttatagcaaatgataaaataa 174  Q
    |||||||||||||||||||||| ||||||||||    
T  45806452 cataagctatttttatagcaaaagataaaataa 45806420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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