View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11836_low_19 (Length: 455)
Name: NF11836_low_19
Description: NF11836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11836_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 13 - 432
Target Start/End: Original strand, 49299498 - 49299931
Alignment:
| Q |
13 |
gagaagaatgaacactagaggaagtattaaatgagattttgctctgttaaaattttgattcatttttacatttagtacatttgtaattgttgaatagaaa |
112 |
Q |
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| T |
49299498 |
gagaagaatgaacactagaggaagtattaaatgagattttgctctgttaaaattttgatttatttttacatttagtacatttgtaattgttgaatagaaa |
49299597 |
T |
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| Q |
113 |
ttggattgtttagacttaaatataaattttaacctttttnnnnnnnnnnnntacacagtttaaaatttgagtcgtgtcgatctcaatccaacgaatacac |
212 |
Q |
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| T |
49299598 |
ttggattgtttagacttaaatataaattttaacctttttaaaaataaaaaatacacagtttaaaatttgagtcgtgtcgatctcaatccaacgaatacac |
49299697 |
T |
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| Q |
213 |
-------ttaattcatgaatacgtcaaaattggagaatagaaaaacgtggtccaaagaagtatagta-------gtacactcgtatttttctgctattaa |
298 |
Q |
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| T |
49299698 |
aatacacttaattcatgaatacgtcaaaattggagaatagaaaaacgtggtccaaagaagtatagtagacagtagtacactcgtatttttctgctattaa |
49299797 |
T |
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| Q |
299 |
tatgggaaataatatcaaacatcaaagcgtggaaagcttattcagagctttgcttataagtcacagttactatcacactttgatgagatataattttctt |
398 |
Q |
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| T |
49299798 |
tatgggaaataatatcaaacatcaaagcgtgaaaagcttattcagagctttgcttataagtcacagttactatcgcactttgatgagatataattttctt |
49299897 |
T |
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| Q |
399 |
tttcttgcaatatacgatagccaaactaggggtg |
432 |
Q |
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| T |
49299898 |
tttcttgcaatatacgatagccaaactaggggtg |
49299931 |
T |
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