View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11836_low_20 (Length: 452)
Name: NF11836_low_20
Description: NF11836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11836_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 53202527 - 53202187
Alignment:
| Q |
1 |
atacctcccttacaaatcaacggtggaggatggtggcggttgaaagcatacgtggctttacgagagacatcccacgtcagcgttgccattaggataagac |
100 |
Q |
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| T |
53202527 |
atacctcccttacaaatcaacggtggaggatggtggcggttgaaagcatacgtggctttacgagagacatcccacgtcagcgttgccattaggataagac |
53202428 |
T |
|
| Q |
101 |
ccaccacggtggttgatatcatgacaacaaaaacgccggtgaaggtacgagcacagagaaaaccgtagagcttaatacaggcgatcacggccacgtagat |
200 |
Q |
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| T |
53202427 |
ccaccacggtggttgatatcatgacaacaaaaacgccggtgaaggtacgagcacagagaaaaccgtagagcttaatacaggcgatcacggccacgtagat |
53202328 |
T |
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| Q |
201 |
tgttgtaaggttgctaacaactgcatctgatagagccataactcaaacaaagagagtggagtgtaatggatgaaggttttttgaggcgttatatttatat |
300 |
Q |
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| T |
53202327 |
tgttgtaaggttgctaacaactgcatctgatagagccataactcaaacaaagagagtggagtgtaatggatgaaggttttttgaggcgttatatttatat |
53202228 |
T |
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| Q |
301 |
aataagtcgatgtttttattgctttgtgtaatgccacactg |
341 |
Q |
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| T |
53202227 |
aatatgtcgatgtttttattgctttgtgtaatgccacactg |
53202187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 406 - 442
Target Start/End: Complemental strand, 53202130 - 53202094
Alignment:
| Q |
406 |
ttgatcaaatcatgaaatgaccaaagacacgcctatg |
442 |
Q |
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| T |
53202130 |
ttgatcaaatcatgaaatgaccaaagacacgcctatg |
53202094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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