View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11836_low_21 (Length: 440)
Name: NF11836_low_21
Description: NF11836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11836_low_21 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 415
Target Start/End: Original strand, 3598391 - 3598795
Alignment:
| Q |
18 |
ataatgtgcaatgaattctattcccccctacaaagtgtaaattaatcaaataaaaagcacgtaattatcagcaattattctgcattgagtaatgttaata |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3598391 |
ataatgtgcaatgaattctattcccccctacaaagtgtaaattaatcaaataaaaagcatgtaattatcagcaattattctgcattgagtaatgttaata |
3598490 |
T |
|
| Q |
118 |
gattaagacttactctaaatcttctagcgtcgcatccatagccttgctga-nnnnnnnnnnnnnnncagtttccgtgacagtgtctttctcaacataacc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
3598491 |
gattaagacttactctaaatcttctagcgtcgcatccatagccttgctgatttttttcatttttttcagtttccgtgacagtgtctttctcaacataacc |
3598590 |
T |
|
| Q |
217 |
agtaacatctaaaaatatgaattttttccaagtatatgtgagaaatgaactaacaactcatgaaaataatctattcaaaagagaagagtaac------ta |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |
|
|
| T |
3598591 |
agtaacatctaaaaatatgaattttttccaagtatatgtgagaaatgaactaacaactcatgaaaataaactattcaaaagagaagagtaaccaagtatc |
3598690 |
T |
|
| Q |
311 |
caatcctccttagagcatcctaaaatctctagaaaaggattaataatttaggacaataattattaaggccttccgcaatttgtgtttctaaagctgcagc |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
3598691 |
caatcctccttagagcatcctaaaatctctagaaaaggattaataatttaggacaataattattaaggccatctgcaatttgtgtttctaaagctgcagc |
3598790 |
T |
|
| Q |
411 |
aagcc |
415 |
Q |
| |
|
||||| |
|
|
| T |
3598791 |
aagcc |
3598795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 18 - 310
Target Start/End: Complemental strand, 4356633 - 4356335
Alignment:
| Q |
18 |
ataatgtgcaatgaattctattcccccctacaaagtgtaaattaatcaaataaaaag----cacgtaattatcagcaattattctgcattgagtaatgtt |
113 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||| ||||||||||||| ||||| ||| ||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
4356633 |
ataatgtgcaatgaattctattccccc-tacgaagtgcaaattaatcaaattaaaagttagcacataattatcaacaattgttctgcattgagtaatgtt |
4356535 |
T |
|
| Q |
114 |
aatagattaagacttactctaaatcttctagcgtcgcatccatagccttgctga-nnnnnnnnnnnnnnncagtttccgtgacagtgtctttctcaacat |
212 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| || || |||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
4356534 |
aatagattaagacttgctctaaatcttctagcgtcacaaccgtagccttgctgatttttccattttttttcagtttccttgacagtgtctttctcaacat |
4356435 |
T |
|
| Q |
213 |
aaccagtaacatctaaaaatatgaatt--ttttccaagtatatgtgagaaatgaactaacaactcatgaaaataatctattcaaaagagaagagtaacta |
310 |
Q |
| |
|
|||| |||||||| ||||||||| || |||||||||||||| ||||||||||||||||||||| ||||||||| | |||||||||||||||||||||| |
|
|
| T |
4356434 |
gaccaataacatcttaaaatatgatttcattttccaagtatatatgagaaatgaactaacaactcctgaaaataaacaattcaaaagagaagagtaacta |
4356335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 192 - 310
Target Start/End: Original strand, 45221399 - 45221519
Alignment:
| Q |
192 |
tgacagtgtctttctcaacataaccagtaacatctaaaaatatgaatt--ttttccaagtatatgtgagaaatgaactaacaactcatgaaaataatcta |
289 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||||||| || |||||||||||||| ||||||||||||||| ||||||||||||||| | | |
|
|
| T |
45221399 |
tgacagtgtctttctcaacatgaccaataacatctaaaaatatgatttcattttccaagtatatatgagaaatgaactaaaaactcatgaaaataaacaa |
45221498 |
T |
|
| Q |
290 |
ttcaaaagagaagagtaacta |
310 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
45221499 |
ttcaaaagagaagagtaacta |
45221519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University