View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11836_low_22 (Length: 428)
Name: NF11836_low_22
Description: NF11836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11836_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 146; Significance: 9e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 178 - 339
Target Start/End: Original strand, 30198245 - 30198406
Alignment:
| Q |
178 |
tggaagcgctttgaaagtgaagattgtcatgagaaatgaaagattgcttctttaagtgttggaataatcattgatgtgtttaaattttataatgtggact |
277 |
Q |
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| T |
30198245 |
tggaaacgctttgaaagtgaagattgtcatgagaaatgaaagattgcttctttaagtgttggaataataactgatatgtttaaattttataatgtggact |
30198344 |
T |
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| Q |
278 |
tcaatagcattttcacgagtttccattaaatgtcaatgtgaaataactttacatcgaccatg |
339 |
Q |
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| T |
30198345 |
tcaatagcattttcacgagtttccattaaatgtcaatgtgaaataactttacatcgaccatg |
30198406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 18 - 177
Target Start/End: Original strand, 30198037 - 30198196
Alignment:
| Q |
18 |
cttagaacatggatgattgtttcatttgtatttcgacaaggagaacaagtgagtaaaacttcaagtcctcatctacttctatgataattagcaagcagcc |
117 |
Q |
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| T |
30198037 |
cttagaacatggatgattgtttcatttgtatttcgacaaggagaacaggtgagtaaaacttcaagtcctcatctacttctatgataattagtaaccagcc |
30198136 |
T |
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| Q |
118 |
actcatgagcaacaatcaacatgaaagtttggattatgtgaggactctttcaaatcaaca |
177 |
Q |
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| T |
30198137 |
actcatgagcaacaaacaacatgaaagtttggattatatgaggactccttcaactcaaca |
30198196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 170
Target Start/End: Complemental strand, 11142148 - 11142105
Alignment:
| Q |
127 |
caacaatcaacatgaaagtttggattatgtgaggactctttcaa |
170 |
Q |
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| T |
11142148 |
caacaatccacatgaatgtttggattttgtgaggactctttcaa |
11142105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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