View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11836_low_24 (Length: 388)
Name: NF11836_low_24
Description: NF11836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11836_low_24 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 119; Significance: 1e-60; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 125 - 259
Target Start/End: Original strand, 23408192 - 23408326
Alignment:
| Q |
125 |
gtccacttataattaaacatatagcagatatcttctgcagaattacagcaaaaaacatccttaattttgcatctaagccaagatcaaattacagtgtcaa |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
23408192 |
gtccacttataattaaacatatagcagatatcttctgcacaattacagcaaaaaacatccttaattttgcatctcagccaagatcaaattacagtgtcag |
23408291 |
T |
|
| Q |
225 |
taaaattgattaattataaacaatcacaatccaca |
259 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
|
|
| T |
23408292 |
taaaattgattaattataaacaatcacaacccaca |
23408326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 23407979 - 23408093
Alignment:
| Q |
1 |
tctaagctcacctctgaactttcatgtatatattttgtatcagatgtgtttgtgcttacagacaaaggatataagcttatcaaattctaattctcagtca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23407979 |
tctaagctcacctctgaactttcatgtatatattttgtatcagatgtgtttgtgcttaaagacaaaggatataagcttatcaaattctaattctcagtca |
23408078 |
T |
|
| Q |
101 |
aattacaaaataata |
115 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
23408079 |
aattacaaaataata |
23408093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 294 - 388
Target Start/End: Original strand, 23408328 - 23408422
Alignment:
| Q |
294 |
aggaggaatccaactatattttatgagaaaatgtattcagtctttgatacccctagatcaatcattcaaaacagagagaaacccaattctacaag |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23408328 |
aggaggaatccaactatattttatgagaaaatgtattccgtctttgatacccctagatcaatcattcaaaacagagagaaacccaattctacaag |
23408422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University