View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11836_low_25 (Length: 359)
Name: NF11836_low_25
Description: NF11836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11836_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 6475441 - 6475107
Alignment:
| Q |
1 |
taaagtctaaatgattggagttaaatttaccacgaatgagtattatctaaatttttaatcaccaccttgaggagagggtgtttgtgtaagactaatagat |
100 |
Q |
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| T |
6475441 |
taaagtctaaatgattggagttaaatttaccacgaatgagtatgatctaaatttgtaatcaccaccttgaggagagggtgtttctgtaagactaataaat |
6475342 |
T |
|
| Q |
101 |
tctaatgactcaaaataagctcaatagattaaaataaactcaagttgattagatattttaagtgataaatcgtactttctagaatagggaatgttacgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
6475341 |
tctaatgactcaaaataagctcaatagattaaaataaacttaagttgattagatattttaagtgataaatcgtactttctagaatggggaatgttacgtt |
6475242 |
T |
|
| Q |
201 |
gacactcatgcactagggacgttatggagaattcatcttacaatgacactttctcattcatttcctcttctctctttcacgatttctcctcttctacaac |
300 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6475241 |
gacactcatgcactagggacgttttggagaattcatcttacaatgacactttctcattcatttcctcttctctctttcacgatttctcctcttctacaac |
6475142 |
T |
|
| Q |
301 |
ggtatgacgcctacctccaccctatcttcgtcggg |
335 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
6475141 |
ggtatgacgcctacctccaccctatcttcgtcggg |
6475107 |
T |
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