View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11836_low_27 (Length: 356)
Name: NF11836_low_27
Description: NF11836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11836_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 44224407 - 44224750
Alignment:
| Q |
1 |
acccaaatgtattggcaacaatcatgtttctacccagggatgcgatggctcggaacaatcctgaagccatctgactcatgaaaaacaacacaacgaactg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44224407 |
acccaaatgtattggcaacaatcatgtttctacccagggatgcgatggctcggaacaatcctgaagccatctgactcatgaaaaacaacacaacgaactg |
44224506 |
T |
|
| Q |
101 |
cttgaacatcctgccaaaaattcaagacctcacatcataagtaacacacaaatgcaaactagatagtagaagtgacattcgatacttcattctccaaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||| |
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| T |
44224507 |
cttgaacatcctgccaaaaattcaagacctcacatcataagtaacacacaaatgcaaactagatagtagaagtgacgttcaatactacattctccaaaca |
44224606 |
T |
|
| Q |
201 |
gaataaaagaaacttcttttaccttccaacatttggatcaaatccaataacatagtaggtaagaaacacccaaagagaaacttccattaatgaaacggga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44224607 |
gaataaaagaaacttcttttaccttccaacatttggatcaaatccaataacatagtaggtaagaaacacccaaagagaaacttccattaatgaaacggga |
44224706 |
T |
|
| Q |
301 |
atcttgagaatccacgaaggaatagcatatgcccatgagggata |
344 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44224707 |
atcttgagaatccacgaaggaatagcatatgcccatgagggata |
44224750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 44212241 - 44212584
Alignment:
| Q |
1 |
acccaaatgtattggcaacaatcatgtttctacccagggatgcgatggctcggaacaatcctgaagccatctgactcatgaaaaacaacacaacgaactg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44212241 |
acccaaatgtattggcaacaatcatgtttctacccagggatgcgatggctcggaacaatcctgaagccatctgactcatgaaaaacaacacaacgaactg |
44212340 |
T |
|
| Q |
101 |
cttgaacatcctgccaaaaattcaagacctcacatcataagtaacacacaaatgcaaactagatagtagaagtgacattcgatacttcattctccaaaca |
200 |
Q |
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||||||||||||||| | |||||||||||||||||||| ||||||| |||||| ||||||||| ||||||| |||||||| ||||| ||| ||||||||| |
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| T |
44212341 |
cttgaacatcctgcctagaattcaagacctcacatcattagtaacatacaaatacaaactagacagtagaactgacattcaatactacatgctccaaaca |
44212440 |
T |
|
| Q |
201 |
gaataaaagaaacttcttttaccttccaacatttggatcaaatccaataacatagtaggtaagaaacacccaaagagaaacttccattaatgaaacggga |
300 |
Q |
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||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||| |
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| T |
44212441 |
gaataaaagcaacttattttacctcccaacatttggatcaaatccaataacatagtaggtaagaaacacccagagagaaacttccactaatgagacggga |
44212540 |
T |
|
| Q |
301 |
atcttgagaatccacgaaggaatagcatatgcccatgagggata |
344 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
44212541 |
atcttgagaatccatgaaggaatagcatatgcccatgagggata |
44212584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 44235222 - 44235560
Alignment:
| Q |
1 |
acccaaatgtattggcaacaatcatgtttctacccagggatgcgatggctcggaacaatcctgaagccatctgactcatgaaaaacaacacaacgaactg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
44235222 |
acccaaatgtattggcaacaatcatgtttctacccagggatgcgatggctcggaacaatcctgaagccatctgactcatgaaaaacaacacaaggaactg |
44235321 |
T |
|
| Q |
101 |
cttgaacatcctgccaaaaattcaagacctcacatcataagtaacacacaaatgcaaactagatagtagaagtgacattcgatacttcattctccaaaca |
200 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||| ||||| ||||| |||| ||| ||||||||| |
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| T |
44235322 |
cttgaacatcctgccaaaa-ttcaagacctcacatcataagtaacat-caaatgcaaacaagatag---aagtggcattcaataccacatgctccaaaca |
44235416 |
T |
|
| Q |
201 |
gaataaaagaaacttcttttaccttccaacatttggatcaaatccaataacatagtaggtaagaaacacccaaagagaaacttccattaatgaaacggga |
300 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| | |||| |
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| T |
44235417 |
gaataaaagaaatttcttttaccttccaacatttggatcaaatccaataacatagtaggtaagaaacacccatagagaaacttccactaatgagatggga |
44235516 |
T |
|
| Q |
301 |
atcttgagaatccacgaaggaatagcatatgcccatgagggata |
344 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44235517 |
atcttgagaatccacgaaggaatagcatatgcccatgagggata |
44235560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 338
Target Start/End: Original strand, 2899254 - 2899364
Alignment:
| Q |
228 |
aacatttggatcaaatccaataacatagtaggtaagaaacacccaaagagaaacttccattaatgaaacgggaatcttgagaatccacgaaggaatagca |
327 |
Q |
| |
|
|||||| ||||| ||||| || ||||| ||||| || || ||||||| || |||||||| |||| || ||||||||||| ||||| | ||| |||||| |
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| T |
2899254 |
aacattcggatcgaatcctattacataataggtgaggaaaacccaaacagcaacttccagaaatgtaataggaatcttgaggatccatgtaggtatagca |
2899353 |
T |
|
| Q |
328 |
tatgcccatga |
338 |
Q |
| |
|
||||||||||| |
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| T |
2899354 |
tatgcccatga |
2899364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 338
Target Start/End: Complemental strand, 2885277 - 2885167
Alignment:
| Q |
228 |
aacatttggatcaaatccaataacatagtaggtaagaaacacccaaagagaaacttccattaatgaaacgggaatcttgagaatccacgaaggaatagca |
327 |
Q |
| |
|
|||||||||||| ||||| || || || ||||| ||||| |||||| || |||||||| || | || ||||||||||| ||||| | ||| |||||| |
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| T |
2885277 |
aacatttggatcgaatcctattacgtaataggtgagaaaaacccaagcagcaacttccagaaaggtaataggaatcttgaggatccatgtaggtatagca |
2885178 |
T |
|
| Q |
328 |
tatgcccatga |
338 |
Q |
| |
|
||||||||||| |
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| T |
2885177 |
tatgcccatga |
2885167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 2885540 - 2885507
Alignment:
| Q |
1 |
acccaaatgtattggcaacaatcatgtttctacc |
34 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
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|
| T |
2885540 |
acccaaatgtattggccacaatcatgtttctacc |
2885507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 286
Target Start/End: Original strand, 39549496 - 39549563
Alignment:
| Q |
219 |
ttaccttccaacatttggatcaaatccaataacatagtaggtaagaaacacccaaagagaaacttcca |
286 |
Q |
| |
|
||||||||||| || |||||| || ||||| |||||||||||||| || ||||||| || |||||||| |
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|
| T |
39549496 |
ttaccttccaatatatggatcgaaaccaatgacatagtaggtaaggaatacccaaacagcaacttcca |
39549563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 274
Target Start/End: Original strand, 39566425 - 39566480
Alignment:
| Q |
219 |
ttaccttccaacatttggatcaaatccaataacatagtaggtaagaaacacccaaa |
274 |
Q |
| |
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||||||| ||| || ||||||||| ||||| |||||||||||||| |||||||||| |
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|
| T |
39566425 |
ttacctttcaatatatggatcaaaaccaatgacatagtaggtaaggaacacccaaa |
39566480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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