View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11836_low_28 (Length: 322)

Name: NF11836_low_28
Description: NF11836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11836_low_28
NF11836_low_28
[»] chr4 (12 HSPs)
chr4 (1-306)||(23408412-23408717)
chr4 (132-306)||(23415712-23415886)
chr4 (133-306)||(23453376-23453549)
chr4 (133-306)||(23885928-23886101)
chr4 (133-306)||(23402175-23402348)
chr4 (133-306)||(23868833-23869006)
chr4 (133-306)||(24307324-24307497)
chr4 (133-306)||(26434125-26434298)
chr4 (133-306)||(26832836-26833009)
chr4 (133-306)||(26435905-26436078)
chr4 (185-306)||(23451788-23451909)
chr4 (133-306)||(34662045-34662218)
[»] chr1 (5 HSPs)
chr1 (144-258)||(33216594-33216708)
chr1 (156-306)||(41670501-41670651)
chr1 (136-304)||(40795872-40796040)
chr1 (156-306)||(29391567-29391717)
chr1 (133-211)||(45576399-45576477)
[»] chr7 (2 HSPs)
chr7 (135-258)||(47317431-47317554)
chr7 (156-259)||(40180297-40180400)
[»] chr2 (1 HSPs)
chr2 (171-223)||(14715433-14715485)


Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 23408412 - 23408717
Alignment:
Q  1 aattctacaagcaattttcaagtcaaatatcattaactccatttcttacacaaaagacatcaacagatcccattagttcattacaactcagaaaattaaa 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23408412 aattctacaagcaattttcatgtcaaatatcattaactccatttcttacacaaaagacatcaacagatcccattagttcattacaactcagaaaattaaa 23408511  T
Q  101 acactaagaaaccaataaacataaacgaaatgtctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcacca 200  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  23408512 acactaagaaaccaataaacataatcgaaatgtctaagagctagtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattctcca 23408611  T
Q  201 ggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcga 300  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23408612 ggaagaacaagtctgaccgcggtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcga 23408711  T
Q  301 agatat 306  Q
    ||||||    
T  23408712 agatat 23408717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 132 - 306
Target Start/End: Original strand, 23415712 - 23415886
Alignment:
Q  132 gtctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaattt 231  Q
    ||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23415712 gtctaagagctagtaaacttagtcacagccttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaattt 23415811  T
Q  232 cccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatat 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23415812 cccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatat 23415886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 133 - 306
Target Start/End: Original strand, 23453376 - 23453549
Alignment:
Q  133 tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc 232  Q
    ||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23453376 tctaagaactagtaaacttggtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagactgactgcagtctgaatttc 23453475  T
Q  233 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatat 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23453476 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatat 23453549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 133 - 306
Target Start/End: Complemental strand, 23886101 - 23885928
Alignment:
Q  133 tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc 232  Q
    ||||||| || |||||||| |||||||| ||||| || ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23886101 tctaagaactagtaaacttggtcacagctttggttccctcagagacagcatgcttggccaattcaccaggaagaacaagcctgactgcagtctgaatttc 23886002  T
Q  233 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatat 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23886001 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatat 23885928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 133 - 306
Target Start/End: Complemental strand, 23402348 - 23402175
Alignment:
Q  133 tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc 232  Q
    ||||||| || |||||||| |||||||| ||||| || || || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23402348 tctaagaactagtaaacttggtcacagctttggttccctctgagacagcatgcttggccaattcaccaggaagaacaagcctgactgcagtctgaatttc 23402249  T
Q  233 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatat 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23402248 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatat 23402175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 133 - 306
Target Start/End: Complemental strand, 23869006 - 23868833
Alignment:
Q  133 tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc 232  Q
    ||||||| || || |||||||||||||| || || ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  23869006 tctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgtttggccaattcaccaggaagaacaagtctgacagcagtctgaatttc 23868907  T
Q  233 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatat 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  23868906 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagtttctcgaagatat 23868833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 133 - 306
Target Start/End: Complemental strand, 24307497 - 24307324
Alignment:
Q  133 tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc 232  Q
    ||||||| || || ||||| |||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  24307497 tctaagaactagtgaacttggtcacagctttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgacagcagtctgaatttc 24307398  T
Q  233 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatat 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  24307397 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagctagtttctcgaagatat 24307324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 133 - 306
Target Start/End: Complemental strand, 26434298 - 26434125
Alignment:
Q  133 tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc 232  Q
    ||||||| || ||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| || |||||||| ||||| || |||||||||||    
T  26434298 tctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttc 26434199  T
Q  233 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatat 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  26434198 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcgagtttctcgaagatat 26434125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 133 - 306
Target Start/End: Complemental strand, 26833009 - 26832836
Alignment:
Q  133 tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc 232  Q
    ||||||| || ||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| || |||||||| ||||| || |||||||||||    
T  26833009 tctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttc 26832910  T
Q  233 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatat 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  26832909 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcgagtttctcgaagatat 26832836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 133 - 306
Target Start/End: Complemental strand, 26436078 - 26435905
Alignment:
Q  133 tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc 232  Q
    ||||||| || ||||||||||| ||||||||||| || ||||||||| ||||||||||||||||||| || |||||||| ||||| || |||||||||||    
T  26436078 tctaagaactggtaaacttagtgacagccttggtaccctcagaaacatcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttc 26435979  T
Q  233 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatat 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  || |||||||||||||    
T  26435978 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggaagattcttgagtgagtttctcgaagatat 26435905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 185 - 306
Target Start/End: Original strand, 23451788 - 23451909
Alignment:
Q  185 cttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattct 284  Q
    ||||||||||||||| || |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||    
T  23451788 cttggccaattcaccgggcagaacaagcctgactgcggtctgaatttcccttgaagtgattgttggcttcttgttgtagcgagcaagtctggagtattct 23451887  T
Q  285 tgagcaagcttctcgaagatat 306  Q
    ||||| |||||||| |||||||    
T  23451888 tgagcgagcttctcaaagatat 23451909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 133 - 306
Target Start/End: Original strand, 34662045 - 34662218
Alignment:
Q  133 tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc 232  Q
    ||||||| ||||||||||| || ||||| ||||| || ||||| ||||||||||| |||||||| |||||||||||||| || || ||||||||||||||    
T  34662045 tctaagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaatttc 34662144  T
Q  233 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatat 306  Q
    ||| ||||| || || ||||||||||| || |  ||||||||||| ||||||||||| ||||||||||||||||    
T  34662145 cctcgaagttatcgtcggcttcttgttataccttgcaagtctggaagattcttgagcgagcttctcgaagatat 34662218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 144 - 258
Target Start/End: Complemental strand, 33216708 - 33216594
Alignment:
Q  144 gtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtga 243  Q
    |||||||| |||||||||||||| || |||||||||||||| ||||||||||||||| |||||||||||||||| ||||| ||||||| |||||||||||    
T  33216708 gtaaacttggtcacagccttggtaccctcagaaacagcatgtttggccaattcaccaagaagaacaagtctgacagcagtttgaattttccttgaagtga 33216609  T
Q  244 ttgttggcttcttgt 258  Q
    |||||||||||||||    
T  33216608 ttgttggcttcttgt 33216594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 156 - 306
Target Start/End: Complemental strand, 41670651 - 41670501
Alignment:
Q  156 acagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttct 255  Q
    ||||||||||| || ||||| ||||||||||| || | |||||| || |||||||| |  || |||||||| || ||||  ||||||||||| |||||||    
T  41670651 acagccttggttccctcagagacagcatgcttagcaagttcaccggggagaacaagacgaacagcagtctgtatctcccgagaagtgattgtaggcttct 41670552  T
Q  256 tgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatat 306  Q
    ||||||| |  ||||||||||| ||||| ||||| |||||||| |||||||    
T  41670551 tgttgtacctcgcaagtctggaagattcctgagcgagcttctcaaagatat 41670501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 304
Target Start/End: Complemental strand, 40796040 - 40795872
Alignment:
Q  136 aagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttccct 235  Q
    ||||||||||||| ||||| || || ||||| || || || ||||| |||||||| | ||| || |||||||| || |  || ||||||||||| || |     
T  40796040 aagagcttgtaaatttagtgactgctttggttccctcggagacagcgtgcttggcaagttcgccgggaagaacgagacgaacagcagtctgaatctcacg 40795941  T
Q  236 tgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagat 304  Q
     || ||||| || || ||||||||||| ||||| |||||||||||||| ||||| |||||||| |||||    
T  40795940 agaggtgatggtaggtttcttgttgtagcgagcgagtctggatgattcctgagcgagcttctcaaagat 40795872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 306
Target Start/End: Complemental strand, 29391717 - 29391567
Alignment:
Q  156 acagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttct 255  Q
    ||||||||||| ||||| ||||||||||| || ||||||||||| |||||||| |  |  || || || ||||| ||||| || || || || || ||||    
T  29391717 acagccttggttccttcggaaacagcatgtttcgccaattcaccgggaagaaccaaacgcacagccgtttgaatctccctcgacgtaatcgtcggtttct 29391618  T
Q  256 tgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatat 306  Q
    ||||||||||||| | ||| || | ||| ||||| || ||||| |||||||    
T  29391617 tgttgtaacgagccaatctagaagcttcctgagcgagtttctcaaagatat 29391567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 211
Target Start/End: Complemental strand, 45576477 - 45576399
Alignment:
Q  133 tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaag 211  Q
    ||||||||||||| || || |||||||| ||||| || ||||||||| ||||||| ||||||||| | || ||||||||    
T  45576477 tctaagagcttgtgaatttggtcacagctttggtaccctcagaaacaacatgcttagccaattcatcgggcagaacaag 45576399  T

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Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 135 - 258
Target Start/End: Complemental strand, 47317554 - 47317431
Alignment:
Q  135 taagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttccc 234  Q
    ||||| || |||||||| |||||||| ||||| || ||||||||| |||| |||||||||||||||||||||| |||||||||  |||| ||||||||||    
T  47317554 taagaactagtaaacttggtcacagctttggtaccctcagaaacaacatgtttggccaattcaccaggaagaataagtctgacaacagtttgaatttccc 47317455  T
Q  235 ttgaagtgattgttggcttcttgt 258  Q
    ||||||||||||||||||||||||    
T  47317454 ttgaagtgattgttggcttcttgt 47317431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 156 - 259
Target Start/End: Original strand, 40180297 - 40180400
Alignment:
Q  156 acagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttct 255  Q
    |||||||| || ||||||||||||||||| || |||||||| ||||||||||| | ||| || ||||| ||||| ||||| ||||| || || |||||||    
T  40180297 acagccttagtcccttcagaaacagcatgtttagccaattctccaggaagaaccaatctaacagcagtttgaatctccctagaagtaatcgtcggcttct 40180396  T
Q  256 tgtt 259  Q
    ||||    
T  40180397 tgtt 40180400  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 14715485 - 14715433
Alignment:
Q  171 tcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagt 223  Q
    ||||| ||| |||||||||||||||| ||||||||||||||||| ||||||||    
T  14715485 tcagacacaacatgcttggccaattctccaggaagaacaagtctcactgcagt 14715433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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