View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11836_low_29 (Length: 318)

Name: NF11836_low_29
Description: NF11836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11836_low_29
NF11836_low_29
[»] chr7 (7 HSPs)
chr7 (1-308)||(47905966-47906273)
chr7 (1-308)||(47908738-47909045)
chr7 (182-288)||(47911153-47911259)
chr7 (63-125)||(47899483-47899545)
chr7 (236-283)||(47916063-47916110)
chr7 (182-287)||(47899309-47899414)
chr7 (67-127)||(47911326-47911386)
[»] chr5 (1 HSPs)
chr5 (74-215)||(39403205-39403346)
[»] chr3 (4 HSPs)
chr3 (196-287)||(41706173-41706264)
chr3 (197-256)||(35351697-35351756)
chr3 (200-288)||(35374793-35374881)
chr3 (205-287)||(35356839-35356921)
[»] chr1 (2 HSPs)
chr1 (64-125)||(31209493-31209554)
chr1 (212-287)||(31209653-31209728)


Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 47906273 - 47905966
Alignment:
Q  1 tcctcctcctccttgagcgaaagggagaaccttcgatatgacgttgacacaatgatggtggtggaggaggaggctccacagggcttacatgagtttgtta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  47906273 tcctcctcctccttgagcgaaagggagaaccttcgatatgacgtcgacacaatgatggtggaggaggaggaggctccacagggcttacatgagtttgtta 47906174  T
Q  101 taaatcttattccgtctttcatctacaatactactattaagtctgaacaagaaacttgttccgtttgcttgactgaattcaaagataatgatcatgttcg 200  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47906173 taaatcttattccgtctttcatctacaatactactactaagtctgaacaagaaacttgttccgtttgcttgactgaattcaaagataatgatcatgttcg 47906074  T
Q  201 taccctccctctttgctcccacatttttcatcacgattgcattgatgtttggcttcgttcaaacactaactgtcctctatgtcgctcccttatttgctgt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47906073 taccctccctctttgctcccacatttttcatcacgattgcattgatgtttggcttcgttcaaacactaactgtcctctatgtcgctcccttatttgctgt 47905974  T
Q  301 catctctg 308  Q
    ||||||||    
T  47905973 catctctg 47905966  T

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Target: chr7; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 47909045 - 47908738
Alignment:
Q  1 tcctcctcctccttgagcgaaagggagaaccttcgatatgacgttgacacaatgatggtggtggaggaggaggctccacagggcttacatgagtttgtta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  47909045 tcctcctcctccttgagcgaaagggagaaccttcgatatgacgtcgacacaataatggtggaggaggaggaggctccacagggcttacatgagtttgtta 47908946  T
Q  101 taaatcttattccgtctttcatctacaatactactattaagtctgaacaagaaacttgttccgtttgcttgactgaattcaaagataatgatcatgttcg 200  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47908945 taaatcttattctgtctttcatctacaatactactactaagtctgaacaagaaacttgttccgtttgcttgactgaattcaaagataatgatcatgttcg 47908846  T
Q  201 taccctccctctttgctcccacatttttcatcacgattgcattgatgtttggcttcgttcaaacactaactgtcctctatgtcgctcccttatttgctgt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47908845 taccctccctctttgctcccacatttttcatcacgattgcattgatgtttggcttcgttcaaacactaactgtcctctatgtcgctcccttatttgctgt 47908746  T
Q  301 catctctg 308  Q
    ||||||||    
T  47908745 catctctg 47908738  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 182 - 288
Target Start/End: Complemental strand, 47911259 - 47911153
Alignment:
Q  182 aagataatgatcatgttcgtaccctccctctttgctcccacatttttcatcacgattgcattgatgtttggcttcgttcaaacactaactgtcctctatg 281  Q
    |||||||| ||||  | |||||||||||| ||||||| |||| ||| |||| | |||||||||| |||||||| ||||||||| ||| ||||||| ||||    
T  47911259 aagataataatcacatccgtaccctccctatttgctctcacactttccatctcaattgcattgacgtttggctccgttcaaacgctagctgtcctgtatg 47911160  T
Q  282 tcgctcc 288  Q
    |||||||    
T  47911159 tcgctcc 47911153  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 125
Target Start/End: Complemental strand, 47899545 - 47899483
Alignment:
Q  63 ggaggaggaggctccacagggcttacatgagtttgttataaatcttattccgtctttcatcta 125  Q
    |||||||||||||||||| |||||| |||||| ||||||| ||  ||||||||| ||||||||    
T  47899545 ggaggaggaggctccacatggcttagatgagtctgttatatatgctattccgtccttcatcta 47899483  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 236 - 283
Target Start/End: Complemental strand, 47916110 - 47916063
Alignment:
Q  236 attgcattgatgtttggcttcgttcaaacactaactgtcctctatgtc 283  Q
    ||||||||| |||||||||||||| |||| ||||||||||| ||||||    
T  47916110 attgcattgttgtttggcttcgtttaaaccctaactgtcctatatgtc 47916063  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 287
Target Start/End: Complemental strand, 47899414 - 47899309
Alignment:
Q  182 aagataatgatcatgttcgtaccctccctctttgctcccacatttttcatcacgattgcattgatgtttggcttcgttcaaacactaactgtcctctatg 281  Q
    |||||||||||||  |||| | ||| ||  |||||||||||| ||| |||| | |||| || || |||||||||||||||||| |||  |||||| | ||    
T  47899414 aagataatgatcacattcgcatccttccgttttgctcccacactttccatctcaattgtatcgacgtttggcttcgttcaaaccctagttgtcctttgtg 47899315  T
Q  282 tcgctc 287  Q
    ||||||    
T  47899314 tcgctc 47899309  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 127
Target Start/End: Complemental strand, 47911386 - 47911326
Alignment:
Q  67 gaggaggctccacagggcttacatgagtttgttataaatcttattccgtctttcatctaca 127  Q
    ||||||| | ||||||||||| | |||| |||||||||   ||||||||||||||||||||    
T  47911386 gaggaggttgcacagggcttagacgagtctgttataaaagctattccgtctttcatctaca 47911326  T

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Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 74 - 215
Target Start/End: Complemental strand, 39403346 - 39403205
Alignment:
Q  74 ctccacagggcttacatgagtttgttataaatcttattccgtctttcatctacaatactactattaagtctgaacaagaaacttgttccgtttgcttgac 173  Q
    ||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||| ||| | |||||||| ||||||| ||||| |||||||||      
T  39403346 ctccacagggcttacatgagtttgttataaatcatataccatctttcatctacaatactgctacttagtctgaaaaagaaacgtgttcagtttgcttggt 39403247  T
Q  174 tgaattcaaagataatgatcatgttcgtaccctccctctttg 215  Q
    |||||||| |||||||||||  ||||||||| | ||||||||    
T  39403246 tgaattcatagataatgatcgagttcgtaccatacctctttg 39403205  T

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Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 196 - 287
Target Start/End: Complemental strand, 41706264 - 41706173
Alignment:
Q  196 gttcgtaccctccctctttgctcccacatttttcatcacgattgcattgatgtttggcttcgttcaaacactaactgtcctctatgtcgctc 287  Q
    |||||||| || ||||| || ||||||| ||||||||  || |||||||||| ||||||||||||| || ||||||||||||| ||||||||    
T  41706264 gttcgtactcttcctctctgttcccacacttttcatcttgactgcattgatgcttggcttcgttcacacgctaactgtcctctctgtcgctc 41706173  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 256
Target Start/End: Original strand, 35351697 - 35351756
Alignment:
Q  197 ttcgtaccctccctctttgctcccacatttttcatcacgattgcattgatgtttggcttc 256  Q
    |||| |||||||||||||| ||||||||||| |||| || ||||||||||| ||||||||    
T  35351697 ttcgcaccctccctctttgttcccacattttccatctcgcttgcattgatgcttggcttc 35351756  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 288
Target Start/End: Original strand, 35374793 - 35374881
Alignment:
Q  200 gtaccctccctctttgctcccacatttttcatcacgattgcattgatgtttggcttcgttcaaacactaactgtcctctatgtcgctcc 288  Q
    |||| ||||||||||| |||||||  || |||| ||| |||||||| | ||||||||||  |||  |||| ||||||||||||||||||    
T  35374793 gtacactccctctttgttcccacagcttccatctcgaatgcattgaagcttggcttcgtaaaaaacctaattgtcctctatgtcgctcc 35374881  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 287
Target Start/End: Original strand, 35356839 - 35356921
Alignment:
Q  205 ctccctctttgctcccacatttttcatcacgattgcattgatgtttggcttcgttcaaacactaactgtcctctatgtcgctc 287  Q
    ||||||||||| ||||||| ||| |||| || ||||||||||| |||||||| |  | |  |||| |||||||||||||||||    
T  35356839 ctccctctttgttcccacactttccatctcgcttgcattgatgcttggcttcataaacaacctaattgtcctctatgtcgctc 35356921  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 31209493 - 31209554
Alignment:
Q  64 gaggaggaggctccacagggcttacatgagtttgttataaatcttattccgtctttcatcta 125  Q
    ||||||||||||||||| |||||| |||||| ||||||| ||  ||||||||| ||||||||    
T  31209493 gaggaggaggctccacatggcttagatgagtctgttatatatgctattccgtccttcatcta 31209554  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 287
Target Start/End: Original strand, 31209653 - 31209728
Alignment:
Q  212 tttgctcccacatttttcatcacgattgcattgatgtttggcttcgttcaaacactaactgtcctctatgtcgctc 287  Q
    |||||||||||| ||| |||| | |||| ||||| |||||||||||||| ||| ||| ||||||| | ||||||||    
T  31209653 tttgctcccacactttccatctcaattgtattgacgtttggcttcgttctaaccctagctgtcctttgtgtcgctc 31209728  T

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