View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11836_low_30 (Length: 312)

Name: NF11836_low_30
Description: NF11836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11836_low_30
NF11836_low_30
[»] chr4 (4 HSPs)
chr4 (19-301)||(1979693-1979977)
chr4 (216-301)||(42266281-42266366)
chr4 (216-301)||(48701675-48701760)
chr4 (216-301)||(30950037-30950122)
[»] chr8 (1 HSPs)
chr8 (216-301)||(9443946-9444031)
[»] chr6 (1 HSPs)
chr6 (216-301)||(27878563-27878648)
[»] chr5 (1 HSPs)
chr5 (216-301)||(41718788-41718873)
[»] chr3 (2 HSPs)
chr3 (216-301)||(2817117-2817202)
chr3 (216-301)||(5823129-5823214)
[»] chr7 (2 HSPs)
chr7 (216-301)||(25441137-25441222)
chr7 (236-301)||(8138338-8138403)
[»] chr2 (1 HSPs)
chr2 (216-301)||(825857-825942)


Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 1979977 - 1979693
Alignment:
Q  19 ccacacacacgtccaagccacaaaatccttcaccc-gtgtcaattgaagcatctccttcaaatattcaactaactcaaaacctaannnnnnnn-acaccg 116  Q
    |||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||         ||||||    
T  1979977 ccacacacacgtccaagccacaaaatctgtcaccccgtgtcaattgaagcatctccttcaaatattcaactaactcaaaacctaatttttttttacaccg 1979878  T
Q  117 tttctaaaccctagaaattctaccccgaaatatagtagagtatctatcaacataatataaacctctcccaagatgaacaccctctaggaaccaatttccc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1979877 tttctaaaccctagaaattctaccccgaaatatagtagagtatctatcaacataatataaacctctcccaagatgaacaccctctaggaaccaatttccc 1979778  T
Q  217 aaactagactggaataattagaattcgtttatgatttggaatattagtctaaactgcaaccatataacatactaagatttttctt 301  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1979777 aaactagactggaataattagaattcgtttatgatgtggaatattagtctaaactgcaaccatataacaaactaagatttttctt 1979693  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 301
Target Start/End: Complemental strand, 42266366 - 42266281
Alignment:
Q  216 caaactagactggaataattagaattcgtttatgatttggaatattagtctaaactgcaaccatataacatactaagatttttctt 301  Q
    |||||||||| |||||||| ||||||| ||| |||| ||||| || ||| ||||| ||||||| | | ||||||||||||||||||    
T  42266366 caaactagaccggaataataagaattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcatactaagatttttctt 42266281  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 301
Target Start/End: Original strand, 48701675 - 48701760
Alignment:
Q  216 caaactagactggaataattagaattcgtttatgatttggaatattagtctaaactgcaaccatataacatactaagatttttctt 301  Q
    |||||||||| |||||||| ||||||| ||| |||| ||||| || ||| ||||| ||||||| | | ||||||||||||||||||    
T  48701675 caaactagaccggaataataagaattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcatactaagatttttctt 48701760  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 301
Target Start/End: Original strand, 30950037 - 30950122
Alignment:
Q  216 caaactagactggaataattagaattcgtttatgatttggaatattagtctaaactgcaaccatataacatactaagatttttctt 301  Q
    |||||||||| ||| |||| ||||||| ||| |||| ||||| || ||| ||||| ||||||| | | ||||||||||||||||||    
T  30950037 caaactagaccggagtaataagaattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcatactaagatttttctt 30950122  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 301
Target Start/End: Original strand, 9443946 - 9444031
Alignment:
Q  216 caaactagactggaataattagaattcgtttatgatttggaatattagtctaaactgcaaccatataacatactaagatttttctt 301  Q
    |||||||||| |||||||| ||||||| ||| |||| ||||| || ||| ||||| ||||||| | | ||||||||||||||||||    
T  9443946 caaactagaccggaataataagaattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcatactaagatttttctt 9444031  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 301
Target Start/End: Original strand, 27878563 - 27878648
Alignment:
Q  216 caaactagactggaataattagaattcgtttatgatttggaatattagtctaaactgcaaccatataacatactaagatttttctt 301  Q
    |||||||||| |||||||| ||||||| ||| |||| ||||| || ||| ||||| ||||||| | | ||||||||||||||||||    
T  27878563 caaactagaccggaataataagaattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcatactaagatttttctt 27878648  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 301
Target Start/End: Complemental strand, 41718873 - 41718788
Alignment:
Q  216 caaactagactggaataattagaattcgtttatgatttggaatattagtctaaactgcaaccatataacatactaagatttttctt 301  Q
    |||||||||| |||||||| ||||||| ||| |||| ||||| || ||| ||||| ||||||| | | ||||||||||||||||||    
T  41718873 caaactagaccggaataataagaattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcatactaagatttttctt 41718788  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 301
Target Start/End: Original strand, 2817117 - 2817202
Alignment:
Q  216 caaactagactggaataattagaattcgtttatgatttggaatattagtctaaactgcaaccatataacatactaagatttttctt 301  Q
    |||||||||| |||||||| ||||||| ||| |||| ||||| || ||| |||||  |||||| ||| ||||||||||||||||||    
T  2817117 caaactagaccggaataataagaattcttttctgatgtggaagatcagtttaaaccacaaccacatagcatactaagatttttctt 2817202  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 301
Target Start/End: Original strand, 5823129 - 5823214
Alignment:
Q  216 caaactagactggaataattagaattcgtttatgatttggaatattagtctaaactgcaaccatataacatactaagatttttctt 301  Q
    |||||||||| |||||||| ||||||| ||| |||| ||||| || ||| ||||| ||||||| | | ||||||||||||||||||    
T  5823129 caaactagaccggaataataagaattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcatactaagatttttctt 5823214  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 301
Target Start/End: Complemental strand, 25441222 - 25441137
Alignment:
Q  216 caaactagactggaataattagaattcgtttatgatttggaatattagtctaaactgcaaccatataacatactaagatttttctt 301  Q
    |||||||||| |||||||| ||||||| |||||||| || || || ||| || || ||||||| | | ||||||||||||||||||    
T  25441222 caaactagacaggaataataagaattcttttatgatgtgaaagatcagtttacaccgcaaccacagagcatactaagatttttctt 25441137  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 301
Target Start/End: Original strand, 8138338 - 8138403
Alignment:
Q  236 agaattcgtttatgatttggaatattagtctaaactgcaaccatataacatactaagatttttctt 301  Q
    ||||||| |||||||| |||||  | |||||||||  |||||| ||| ||||||||||||||||||    
T  8138338 agaattcttttatgatgtggaagttcagtctaaaccacaaccaaatagcatactaagatttttctt 8138403  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 301
Target Start/End: Complemental strand, 825942 - 825857
Alignment:
Q  216 caaactagactggaataattagaattcgtttatgatttggaatattagtctaaactgcaaccatataacatactaagatttttctt 301  Q
    |||||||||| |||| ||| ||||||| ||| |||| ||||| || ||| ||||| ||||||| | | ||||||||||||||||||    
T  825942 caaactagaccggaacaataagaattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcatactaagatttttctt 825857  T

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