View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11836_low_36 (Length: 269)
Name: NF11836_low_36
Description: NF11836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11836_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 254
Target Start/End: Complemental strand, 22919394 - 22919154
Alignment:
| Q |
19 |
agacttttggttcgaatgtactcagctctatctattgatcaatgaatgttatttctaatatgtttttatgattaacaagtaaatatatattatgaaatat |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
22919394 |
agacttttggttcgaatgtactcagctctatctattgatcaatgaatgttatttctaatatgtttttatgattaacaagtaaatatagattatgaaatat |
22919295 |
T |
|
| Q |
119 |
aaatggtgcatggactagcatattcgatgaagtaaaatgtgtatcctcctttagaagctgcacttatagatcaaacctttttaga-----aattttttaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
22919294 |
aaatggtgcatggactagcatattcgatgaagtaaaatgtgtatcctcctttagaagctgcacttatagatcaaacctttttcgaaatttaattttttaa |
22919195 |
T |
|
| Q |
214 |
caagtaaatagagcaaaaacattttacttggcagctctgtg |
254 |
Q |
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||||||||||||||||||||||||||| ||||||||||||| |
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| T |
22919194 |
caagtaaatagagcaaaaacattttacgtggcagctctgtg |
22919154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 3523531 - 3523310
Alignment:
| Q |
19 |
agacttttggttcgaatgtactcagctctatctattgatcaatgaatgttatttctaatatgtttttatgattaacaagtaaatatatattatgaaatat |
118 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
3523531 |
agacttttggttcgaatgtactcatctctatctattgatcaatgaatgttatttctaatatgtttttatgagtaacaagtaaatatagattatgaaatat |
3523432 |
T |
|
| Q |
119 |
aaatggtgcatggactagcatattcgatgaagtaaaatgtgtatcctcctttagaagctgcacttatagatcaaacctttttaga-----aattttttaa |
213 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||| || |||||||||| |
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| T |
3523431 |
aaatggtgcatggactagcatattctgtgaagtaaaatgtgtatccttctttagaagttgcacttatagatcaaacctttttcgaaatttaattttttaa |
3523332 |
T |
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| Q |
214 |
caagtaaatagagcaaaaacat |
235 |
Q |
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|||||||||||||||||||||| |
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| T |
3523331 |
caagtaaatagagcaaaaacat |
3523310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 43787958 - 43787908
Alignment:
| Q |
204 |
aattttttaacaagtaaatagagcaaaaacattttacttggcagctctgtg |
254 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43787958 |
aattttttaacaagtaaatagagcaaaaacattatacttggcagctctgtg |
43787908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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