View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11836_low_37 (Length: 267)
Name: NF11836_low_37
Description: NF11836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11836_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 37783638 - 37783404
Alignment:
| Q |
16 |
ttgttaggattgggtataacgaactcaggtttattctccatgttgatttctaaagatgatgatttattcttctttttcatttctttgttcttactccaaa |
115 |
Q |
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| T |
37783638 |
ttgttaggactgggtataacgaactcaggtttattctccatgttgatttctaaagatgatgatttattcttctttttcatttctttgttcttactccaaa |
37783539 |
T |
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| Q |
116 |
gcactgcatatatgccacatacaatcaacactgctccaaagacactgtatacaacgaaattatatcaaatcaattttcatgcatatcaaggttaaaaaag |
215 |
Q |
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| T |
37783538 |
gtactgcatatatgccacatacaatcaacactgctccaaagacactgtatacaaccaaattatatcaaatcaattttcatgcatatcaaggttaaaaaag |
37783439 |
T |
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| Q |
216 |
ataacatatgaataatatatgtttaaggtagaagt |
250 |
Q |
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| T |
37783438 |
ataacatatgaataatatatgtttaaggtataagt |
37783404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 58 - 188
Target Start/End: Complemental strand, 37808839 - 37808709
Alignment:
| Q |
58 |
ttgatttctaaagatgatgatttattcttctttttcatttctttgttcttactccaaagcactgcatatatgccacatacaatcaacactgctccaaaga |
157 |
Q |
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| T |
37808839 |
ttgatttttaatgataataattgagtcttttttttcatttctatgcccttactccaaagcaccgcatataggccacacacaatcaatactgctccaaaaa |
37808740 |
T |
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| Q |
158 |
cactgtatacaacgaaattatatcaaatcaa |
188 |
Q |
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| T |
37808739 |
cactatatacaaccaaactatatcaaatcaa |
37808709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 154
Target Start/End: Complemental strand, 37793067 - 37793003
Alignment:
| Q |
90 |
tttcatttctttgttcttactccaaagcactgcatatatgccacatacaatcaacactgctccaa |
154 |
Q |
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| T |
37793067 |
tttcatttctttgctcttactccaaagcaccacatataggccgcacacaatcagcactgctccaa |
37793003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 154
Target Start/End: Complemental strand, 37804150 - 37804086
Alignment:
| Q |
90 |
tttcatttctttgttcttactccaaagcactgcatatatgccacatacaatcaacactgctccaa |
154 |
Q |
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| T |
37804150 |
tttcatttctttgttcttactccacagcactatatataggccgcacacgatcaacactgctccaa |
37804086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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