View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11836_low_39 (Length: 255)

Name: NF11836_low_39
Description: NF11836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11836_low_39
NF11836_low_39
[»] chr7 (3 HSPs)
chr7 (12-104)||(19722291-19722382)
chr7 (163-240)||(19722441-19722518)
chr7 (179-230)||(19358347-19358398)


Alignment Details
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 19722291 - 19722382
Alignment:
Q  12 atgaagtgctgtggttttttgccaaagaatatgttgaaagcttggcttcaacaacgttttgaaagtaagttcctcttcaatatttagttcaaa 104  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19722291 atgaagtgctgtggttttttgccaa-gaatatgttgaaagcttggcttcaacaacgttttgaaagtaagttcctcttcaatatttagttcaaa 19722382  T

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Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 19722441 - 19722518
Alignment:
Q  163 aatataatattataagttataacttgacgactatcctcctaaaaggaaattcaatgactcttgaatgatgtttgtttg 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19722441 aatataatattataagttataacttgacgactatcctcctaaaaggaaattcaatgactcttgaatgatgtttgtttg 19722518  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 19358347 - 19358398
Alignment:
Q  179 ttataacttgacgactatcctcctaaaaggaaattcaatgactcttgaatga 230  Q
    ||||||||||||||  |||||||  |||||||||||||| ||||||||||||    
T  19358347 ttataacttgacgataatcctccgtaaaggaaattcaataactcttgaatga 19358398  T

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