View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11836_low_43 (Length: 245)
Name: NF11836_low_43
Description: NF11836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11836_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 3563133 - 3563371
Alignment:
| Q |
1 |
gtagattactatcaaggactgatgccaaccagcaccataaatcaaatgcgaaattacactnnnnnnnnngatgaaatgaagtttctgagtgcattgaaca |
100 |
Q |
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| T |
3563133 |
gtagattactatcaaggactgatgccaaccagcaccataaatcaaatgcgaaattacactaaaaaaaa-gatgaaatgaagtttctgagtgcattgaaca |
3563231 |
T |
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| Q |
101 |
taaagagcacatagatggaagattacatcccctttccattagcttttcatcagtgggaaccttgtcatgcattaatctccaagcaagcagagacttggac |
200 |
Q |
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| T |
3563232 |
taaagagcacatagatggaagattacatcccctttccattagcttttcatcagtgggaaccttgtcatgcattaatctccaagaaagcagagacttggac |
3563331 |
T |
|
| Q |
201 |
ggaggaatatccttgcaccaaattgtagaggccctatgct |
240 |
Q |
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| T |
3563332 |
ggaggaatatccttgcaccaaattgtagaggcccaatgct |
3563371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 226
Target Start/End: Original strand, 9749488 - 9749605
Alignment:
| Q |
109 |
acatagatggaagattacatcccctttccattagcttttcatcagtgggaaccttgtcatgcattaatctccaagcaagcagagacttggacggaggaat |
208 |
Q |
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| T |
9749488 |
acatagatggaatgttgcaacccatttccatgagtttttcatcgatgagtactttatcatgcattaatctccaagctagaagagatttttatgggggtat |
9749587 |
T |
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| Q |
209 |
atccttgcaccaaattgt |
226 |
Q |
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| T |
9749588 |
atccttacaccaaattgt |
9749605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 223
Target Start/End: Original strand, 12053842 - 12053963
Alignment:
| Q |
102 |
aaagagcacatagatggaagattacatcccctttccattagcttttcatcagtgggaaccttgtcatgcattaatctccaagcaagcagagacttggacg |
201 |
Q |
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| T |
12053842 |
aaagagcacattgatgggagattgcagcctctttgcttcagcttatcatcaataggcattttgtcatgaagtaatctccaagcaatcagagatttagaag |
12053941 |
T |
|
| Q |
202 |
gaggaatatccttgcaccaaat |
223 |
Q |
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|||| ||||| |||||||||| |
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| T |
12053942 |
gaggtatatcaatgcaccaaat |
12053963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 108 - 234
Target Start/End: Original strand, 14169886 - 14170012
Alignment:
| Q |
108 |
cacatagatggaagattacatcccctttccattagcttttcatcagtgggaaccttgtcatgcattaatctccaagcaagcagagacttggacggaggaa |
207 |
Q |
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| T |
14169886 |
cacattgatggaaggttgcatcctctttccatgagtttttcatctgttggaactttgtcatgcattaatctccaagctagcagagatttgaatggaggaa |
14169985 |
T |
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| Q |
208 |
tatccttgcaccaaattgtagaggccc |
234 |
Q |
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| T |
14169986 |
tatccttgcaccaaattgtagaggccc |
14170012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 181
Target Start/End: Original strand, 30254104 - 30254141
Alignment:
| Q |
144 |
ttttcatcagtgggaaccttgtcatgcattaatctcca |
181 |
Q |
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| T |
30254104 |
ttttcatcagttggaaccttgtcatgcatcaatctcca |
30254141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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