View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11836_low_5 (Length: 724)

Name: NF11836_low_5
Description: NF11836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11836_low_5
NF11836_low_5
[»] chr2 (1 HSPs)
chr2 (18-711)||(38891683-38892381)
[»] chr7 (2 HSPs)
chr7 (253-337)||(31795644-31795729)
chr7 (425-462)||(29392515-29392552)
[»] chr5 (2 HSPs)
chr5 (302-488)||(34981081-34981268)
chr5 (419-469)||(16388148-16388197)
[»] chr8 (1 HSPs)
chr8 (363-449)||(2615158-2615244)
[»] chr1 (4 HSPs)
chr1 (231-321)||(12380575-12380664)
chr1 (231-321)||(12384642-12384731)
chr1 (231-280)||(12363599-12363648)
chr1 (363-452)||(21932222-21932311)


Alignment Details
Target: chr2 (Bit Score: 630; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 18 - 711
Target Start/End: Complemental strand, 38892381 - 38891683
Alignment:
Q  18 ccaacaactaatataagagcttttggtttggaagtgttgttttggaaggttctagcttggaaagacttggtacttagacaagtccattgtgacttgacct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  38892381 ccaacaactaatataagagcttttggtttggaagtgttgttttggaaggttctagctaggaaagacttggtacttagacgagtccattgtgacttgacct 38892282  T
Q  118 ctctttattgggaacttctctagtgcatagttgtggtatggatacaattacaatcacaagtttcgttgtgaagtttggacgagagagaattgatggaaga 217  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38892281 ctctttattaggaacttctctagtgcatagttgtggtatggatacaattacaatcacaagttccgttgtgaagtttggacgagagagaattgatggaaga 38892182  T
Q  218 atcattttttggcttgtggaaaattcaagttaacaatgtgttgatacaatcaatattacacaaggtgtttcttagtacatggacattgattgaaattgat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38892181 atcattttttggcttgtggaaaattcaagttaacaatgtgttgatacaatcaatattacacaaggtgtttcttagtacatggacattgattgaaattgat 38892082  T
Q  318 gcaaagtgtgtgtgagattacttcggcaattgaacaattttcaatcaacatggaagctgcatcataagttttcaaactaattttcaacatgtgaaagttc 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  38892081 gcaaagtgtgtgtgagattacttcggcaattgaacaattttcaatcaacatggaagctgcaccataagttttcaaactaattttcgacatgtgaaagttc 38891982  T
Q  418 atggagtggtttaacttcaagtaaaatatactctttatggtggattatgatagttttttgaatgatgattgccggtgacggcaatgacagtatatgtacc 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  38891981 atggagtggtttaacttcaagtaaaatatactctttatggtggattatgatagttttttgaatgatgattgccggtgacggcaatgacaatatatgtacc 38891882  T
Q  518 attttcaatggagatgaagattgttggtattagttgaaaaatatatgttgaagaagtctcacattac---gtattataaaggaaaaggaaggttgggac- 613  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||| ||||||||||     
T  38891881 attttcaatggagatgaagattgttggtgttagttgaaaaatatatgttgaagaagtctcacattacctagtattataaaggaaaagggaggttgggact 38891782  T
Q  614 -tatatatatggactataattttttgttatatgacacactagccaaaaacacattaaacttctatggaactttttcttttcttttctcttgtacctttg 711  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  38891781 atatatatatggactataattttttgttatatgacacactagccaaaaacacattaaacttgtatggaattttttcttttcttttctcttgtacctttg 38891683  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 253 - 337
Target Start/End: Complemental strand, 31795729 - 31795644
Alignment:
Q  253 atgtgttgatacaatcaatattacacaaggtgtttcttagtacatggacattgattgaaattgatgcaaagtgtg-tgtgagatta 337  Q
    |||||||||||||||||| |||||||||||||||  |||||||| |  ||||| |||| |||||| ||||||||| ||||||||||    
T  31795729 atgtgttgatacaatcaagattacacaaggtgttgattagtacacgcgcattggttgacattgatacaaagtgtgttgtgagatta 31795644  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 425 - 462
Target Start/End: Original strand, 29392515 - 29392552
Alignment:
Q  425 ggtttaacttcaagtaaaatatactctttatggtggat 462  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  29392515 ggtttaacttcaagtaaagtataccctttatggtggat 29392552  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 302 - 488
Target Start/End: Complemental strand, 34981268 - 34981081
Alignment:
Q  302 attgattgaaattgatgcaaagtgtgtgtgagattacttcggcaattgaacaattttcaatcaacatggaagctgcatcataagttttcaaactaatttt 401  Q
    ||||||||| ||||||||||||||||| ||||||||  || |   ||||| | ||||||| ||| ||||||| ||||  ||||||||| |   | |||||    
T  34981268 attgattgacattgatgcaaagtgtgtttgagattatgtcagtggttgaagagttttcaaccaatatggaagttgcacgataagtttttagcatgatttt 34981169  T
Q  402 caacatgtgaaagttcatggagtggtttaacttcaagtaaaatatactctttatggtggattatgatagtt-ttttgaatgatgattg 488  Q
      |||||||||| ||  ||||||||||||| ||| ||| || |||| | |||||| |||| |||||||||| |||||||  |||||||    
T  34981168 tgacatgtgaaaattattggagtggtttaaattcgagtgaagtatattttttatgatggagtatgatagttcttttgaactatgattg 34981081  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 419 - 469
Target Start/End: Original strand, 16388148 - 16388197
Alignment:
Q  419 tggagtggtttaacttcaagtaaaatatactctttatggtggattatgata 469  Q
    ||||||||||||||||||||| |  |||||||||||||||||| |||||||    
T  16388148 tggagtggtttaacttcaagtgat-tatactctttatggtggagtatgata 16388197  T

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Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 363 - 449
Target Start/End: Complemental strand, 2615244 - 2615158
Alignment:
Q  363 caacatggaagctgcatcataagttttcaaactaattttcaacatgtgaaagttcatggagtggtttaacttcaagtaaaatatact 449  Q
    ||||||| ||| ||||| |||||||||||  |  ||||||||||||| ||| ||| ||||||| |||||||||||||||| ||||||    
T  2615244 caacatgaaagttgcattataagttttcagccggattttcaacatgtaaaaattcttggagtgttttaacttcaagtaaagtatact 2615158  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 231 - 321
Target Start/End: Original strand, 12380575 - 12380664
Alignment:
Q  231 ttgtggaaaattcaagttaacaatgtgttgatacaatcaatattacacaaggtgtttcttagtacatggacattgattgaaattgatgcaa 321  Q
    ||||| ||||||||||| || |||||||||||||| |||| |||||||||  | ||  |||||| |||  |||||||||| ||||||||||    
T  12380575 ttgtgaaaaattcaagtaaaaaatgtgttgatacattcaagattacacaa-atattgattagtatatgagcattgattgacattgatgcaa 12380664  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 231 - 321
Target Start/End: Original strand, 12384642 - 12384731
Alignment:
Q  231 ttgtggaaaattcaagttaacaatgtgttgatacaatcaatattacacaaggtgtttcttagtacatggacattgattgaaattgatgcaa 321  Q
    ||||| ||||||||||| || |||||||||||||| |||| |||||||||  | ||  |||||| |||  |||||||||| ||||||||||    
T  12384642 ttgtgaaaaattcaagtaaaaaatgtgttgatacattcaagattacacaa-atattgattagtatatgagcattgattgacattgatgcaa 12384731  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 231 - 280
Target Start/End: Original strand, 12363599 - 12363648
Alignment:
Q  231 ttgtggaaaattcaagttaacaatgtgttgatacaatcaatattacacaa 280  Q
    ||||| ||||||||||| || |||||||||||||| |||| |||||||||    
T  12363599 ttgtgaaaaattcaagtaaaaaatgtgttgatacattcaagattacacaa 12363648  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 363 - 452
Target Start/End: Complemental strand, 21932311 - 21932222
Alignment:
Q  363 caacatggaagctgcatcataagttttcaaactaattttcaacatgtgaaagttcatggagtggtttaacttcaagtaaaatatactctt 452  Q
    ||||||||||| ||||  ||||||||||||  | | |||| |||||||||||||| || | | ||| |||||||||| || |||||||||    
T  21932311 caacatggaagttgcacaataagttttcaacttgaatttcgacatgtgaaagttcttgaaatagttcaacttcaagtgaagtatactctt 21932222  T

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