View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11836_low_8 (Length: 581)
Name: NF11836_low_8
Description: NF11836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11836_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 9 - 391
Target Start/End: Original strand, 16922820 - 16923203
Alignment:
| Q |
9 |
gagaagcataggccaggtagtagcaaccatgaagatgatgatgaagtaagattccctagccaaatttatttaacaaaacgatattaataatcattttaca |
108 |
Q |
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| T |
16922820 |
gagaatcataggccaggtaggagcaaccatgaagatgatgatgaagtaagattccctagccaaatttatttaacaaaacgatattaataatcattttaca |
16922919 |
T |
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| Q |
109 |
accgttgtcgatgagacttaaactttaaccctagactccgaaatgttcaacttactttagtcaatnnnnnnnntaccacatcactttcaaacnnnnnnnn |
208 |
Q |
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| T |
16922920 |
accgttgtcgatgagacttaaactttaaccctagactccgaaatgttcaacttactttagtcaataaaaaaaataccacatcactttcaagctttttttt |
16923019 |
T |
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| Q |
209 |
-ccttttcaattatttgatggtataattctttaatctaaaattcctttcattttgtacttgcagatagctgttaaagaagaagatgatatggttgattcc |
307 |
Q |
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| T |
16923020 |
tccttttcaattatttgatggtataattctttaatttaagattcctttcattttgtacttgcagatagctgttaaagaagaagatgatatggttgattcc |
16923119 |
T |
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| Q |
308 |
tcagatatctttgcacatatcagtggacttaactccttcaaatgcaactattccatccactcattgatttgaattaattaatta |
391 |
Q |
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| T |
16923120 |
tcagatatctttgcacatatcagtggacttaactccttcaaatgcaactattccatccactcattgatttgaattaattaatta |
16923203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 455 - 563
Target Start/End: Original strand, 16923253 - 16923361
Alignment:
| Q |
455 |
ttagcttgtgtagatttttgtagggccctttaccatcttcagggcttgatggcataaggaaagtgaataattggggtccaaaatattatatatcaataag |
554 |
Q |
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| T |
16923253 |
ttagcttgtgtagatttttgtagggccctttaccatcttcagggcttgatggcataaggaaagtgaataattggggtccaaaatattatatatcaataag |
16923352 |
T |
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| Q |
555 |
tgagttagg |
563 |
Q |
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| T |
16923353 |
tgagttagg |
16923361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 281 - 379
Target Start/End: Original strand, 32555865 - 32555963
Alignment:
| Q |
281 |
aaagaagaagatgatatggttgattcctcagatatctttgcacatatcagtggacttaactccttcaaatgcaactattccatccactcattgatttga |
379 |
Q |
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| T |
32555865 |
aaagaggaagatgatatggttgattcctcagatatatttgctcatatcagtggagtgaactccttcaaatgcaattattccattcaatcatggatttga |
32555963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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