View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11837_high_10 (Length: 475)
Name: NF11837_high_10
Description: NF11837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11837_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 221 - 444
Target Start/End: Complemental strand, 41825602 - 41825379
Alignment:
| Q |
221 |
cagtggcggagccacattgaattgaggggatgcatttgcataccctgacatcaaaaaatttgcacctaccttctcataaaattttagctatgaacccctt |
320 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
41825602 |
cagtggcggagccacattgaattgaggggatgcacttgcataccctgacatcaaaaaatttgcacctaccttctcataaaattttagctatgaaccctct |
41825503 |
T |
|
| Q |
321 |
gaattaatttctttgcaccgaatgatgaacccactcacatttgctattagttcaatggttccatgacattcttactctaacccattagcattcttaaaag |
420 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41825502 |
gaattaatttctttgcaccgaatgatgaacccactcacatttgctattagttcaatggttctatgacattcttactctaacccattagcattcttaaaag |
41825403 |
T |
|
| Q |
421 |
ctatgcagttcaatttcatttgca |
444 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
41825402 |
ttatgcagttcaatttcatttgca |
41825379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 270 - 456
Target Start/End: Original strand, 29611525 - 29611710
Alignment:
| Q |
270 |
atcaaaaaatttgcacctaccttctcataaaattttagctatgaaccccttgaattaatttctttgcaccgaatgatgaacccactcacatttgctatta |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29611525 |
atcaaaaaatttgcacctaccttctcataaaattttagctatgaacccct-gaattaatttctttgcaccgaatgatgaacccactcacatttgctatta |
29611623 |
T |
|
| Q |
370 |
gttcaatggttccatgacattcttactctaacccattagcattcttaaaagctatgcagttcaatttcatttgcaattgccaatgaa |
456 |
Q |
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| T |
29611624 |
gttcaatggttccctgacattcttactctaacccattagcatttttaaaagctatgcacttcaatttcatttgcaattgccaatgaa |
29611710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 221 - 456
Target Start/End: Complemental strand, 31808433 - 31808198
Alignment:
| Q |
221 |
cagtggcggagccacattgaattgaggggatgcatttgcataccctgacatcaaaaaatttgcacctaccttctcataaaattttagctatgaacccctt |
320 |
Q |
| |
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|||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |
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| T |
31808433 |
cagtggcggagccacattaaattgaggggatgcacttgcattccctgacatcaaaaaatttgcacctaccttctaataaaattttagctatgaaccctct |
31808334 |
T |
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| Q |
321 |
gaattaatttctttgcaccgaatgatgaacccactcacatttgctattagttcaatggttccatgacattcttactctaacccattagcattcttaaaag |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31808333 |
gaattaatttctttgcaccgaatgatgaacccactcacatttactattagttcaatggttccatgacattcttactctaacctattagcattcttaaaag |
31808234 |
T |
|
| Q |
421 |
ctatgcagttcaatttcatttgcaattgccaatgaa |
456 |
Q |
| |
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||||||| |||||||||||||||||||||||||||| |
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| T |
31808233 |
ctatgcaattcaatttcatttgcaattgccaatgaa |
31808198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 221 - 438
Target Start/End: Complemental strand, 50537402 - 50537182
Alignment:
| Q |
221 |
cagtggcggagccacattgaattgaggggatgcatttgcataccctgacatcaaaaaatttgcacctaccttctcataaaattttagctatgaacccctt |
320 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||| |||||| |||||| ||||||||||| | ||||||||| | | |
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| T |
50537402 |
cagtggcggagccacattgacttgaggggatgcaattgcataccctgacatctaaaatattgcacataccttttcataaaatttaaactatgaacctcct |
50537303 |
T |
|
| Q |
321 |
gaattaatttctttgcaccgaatgatgaacccactcacatttgctattagttca---atggttccatgacattcttactctaacccattagcattcttaa |
417 |
Q |
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||| ||| || ||||||||||||||| ||| |||| ||| ||||||||| |||| ||||||| || |||||||||||||||||||| ||| |||| |
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| T |
50537302 |
gaactaacttgtttgcaccgaatgattaactcacttacaattgctattaattcaatcatggttctgtggcattcttactctaacccattgaaatttttaa |
50537203 |
T |
|
| Q |
418 |
aagctatgcagttcaatttca |
438 |
Q |
| |
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||||| ||||||||||||||| |
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| T |
50537202 |
aagctgtgcagttcaatttca |
50537182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 221 - 438
Target Start/End: Original strand, 15827178 - 15827400
Alignment:
| Q |
221 |
cagtggcggagccacattgaattgaggggatgcattt-----gcataccctgacatcaaaaaatttgcacctaccttctcataaaattttagctatgaac |
315 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||| || |||||||||| |||||||||| ||| |||||||||||| |||||| ||| |||||||| |
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| T |
15827178 |
cagtggcagagccacattgagttgaggggatgcacttagcttgcataccctggcatcaaaaaaattggacctaccttctcgtaaaatcttaactatgaac |
15827277 |
T |
|
| Q |
316 |
cccttgaattaatttctttgcaccgaatgatgaacccactcacatttgctattagttcaatggttccatgacattcttactctaacccattagcattctt |
415 |
Q |
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| | | || |||||||||||||||||||||||||| || |||| ||| ||| ||||||||||||| | || |||||||||||| ||||||| ||||||| |
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| T |
15827278 |
ctcctcaactaatttctttgcaccgaatgatgaactcagtcaccttttctactagttcaatggtttcgtggcattcttactcttacccattgacattctt |
15827377 |
T |
|
| Q |
416 |
aaaagctatgcagttcaatttca |
438 |
Q |
| |
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||||||| ||||||||||||||| |
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| T |
15827378 |
aaaagctgtgcagttcaatttca |
15827400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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