View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11837_high_11 (Length: 454)

Name: NF11837_high_11
Description: NF11837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11837_high_11
NF11837_high_11
[»] chr5 (8 HSPs)
chr5 (15-442)||(14229203-14229627)
chr5 (135-262)||(14223790-14223917)
chr5 (152-287)||(14226521-14226656)
chr5 (84-227)||(14219215-14219360)
chr5 (194-287)||(14221183-14221276)
chr5 (318-396)||(14219552-14219630)
chr5 (197-280)||(14230874-14230957)
chr5 (152-287)||(14221963-14222101)


Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 15 - 442
Target Start/End: Original strand, 14229203 - 14229627
Alignment:
Q  15 aaaacaacatgactagctctccaaagatttaaataaggtctacccggtgcagacagttacccaattctttgacactgaaatatataaattatattttcag 114  Q
    ||||| |||| |||| ||||||||||| |||||||||  ||||| || ||||||| ||||||||||   |||||||||||||||||||||||||||||||    
T  14229203 aaaactacataactaactctccaaagacttaaataagcgctaccggg-gcagacaattacccaatt---tgacactgaaatatataaattatattttcag 14229298  T
Q  115 ctttcacacacgggatgtaatgaacaacaactatgcatgtttatatatagccttgagcctcatctcatctctcatactagcgatgtgggactaaatataa 214  Q
    || ||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  14229299 ctatcacacacgagatcgaatgaacaacaactatgcatgtttatatatagccttgagcctcatctcatctctcatactagcgatgtgggactaaatatga 14229398  T
Q  215 gtgacttgtgaaagtttagtcaccactcgccaaattgagttccaaaatcattgttacacacatccactgcacaatgtacaagaagtacgttgaggagccg 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14229399 gtgacttgtgaaagtttagtcaccactcgccaaattgagttccaaaatcattgttacacacatccactgcacaatgtacaagaagtacgttgaggagccg 14229498  T
Q  315 ataattacaagaataaagatctatgaactaggaa-tcagccccaaacacttcaaaactacagacaataaaacaaatgcatccttcatcatcttgtgctag 413  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14229499 ataattacaagaataaaggtctatgaactaggaagtcagccccaaacacctcaaaactacagacaataaaacaaatgcatccttcatcatcttgtgctag 14229598  T
Q  414 acaataagagataaatgcaaaccaattca 442  Q
    |||||| ||||||||||||||||||||||    
T  14229599 acaataggagataaatgcaaaccaattca 14229627  T

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Target: chr5; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 135 - 262
Target Start/End: Original strand, 14223790 - 14223917
Alignment:
Q  135 tgaacaacaactatgcatgtttatatatagccttgagcctcatctcatctctcatactagcgatgtgggactaaatataagtgacttgtgaaagtttagt 234  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||    
T  14223790 tgaaaaacaactatgcatgtttatatatagccttaagcctcatctcatctctcatactagcaatgtgggactaaatataagtgaattgtgaaactttagt 14223889  T
Q  235 caccactcgccaaattgagttccaaaat 262  Q
    |||||||||||||||| |||| ||||||    
T  14223890 caccactcgccaaattcagtttcaaaat 14223917  T

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Target: chr5; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 152 - 287
Target Start/End: Original strand, 14226521 - 14226656
Alignment:
Q  152 tgtttatatatagccttgagcctcatctcatctctcatactagcgatgtgggactaaatataagtgacttgtgaaagtttagtcaccactcgccaaattg 251  Q
    |||||||||| || ||| ||||||||||||||||||||| | ||||||||||||||| ||| |||||||| ||||| ||||||||||||||||||||||     
T  14226521 tgtttatatacaggcttcagcctcatctcatctctcatattggcgatgtgggactaattatgagtgacttttgaaactttagtcaccactcgccaaattc 14226620  T
Q  252 agttccaaaatcattgttacacacatccactgcaca 287  Q
    || || ||||||||||||| ||||||||||||||||    
T  14226621 agctcaaaaatcattgttatacacatccactgcaca 14226656  T

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Target: chr5; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 84 - 227
Target Start/End: Original strand, 14219215 - 14219360
Alignment:
Q  84 tgacactgaaatatataaattatattttcagctttcacacacgggatg--taatgaacaacaactatgcatgtttatatatagccttgagcctcatctca 181  Q
    |||||||||| |||||| ||||||  ||||||||| ||||| | ||||  | | || ||||| |||||||||||||||||||||||| || |||||||||    
T  14219215 tgacactgaattatatatattataccttcagcttttacacatgagatggtttacgaccaacagctatgcatgtttatatatagccttaagtctcatctca 14219314  T
Q  182 tctctcatactagcgatgtgggactaaatataagtgacttgtgaaa 227  Q
    | ||||||||||||||||||||||||||||| ||||||||||||||    
T  14219315 tatctcatactagcgatgtgggactaaatatgagtgacttgtgaaa 14219360  T

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Target: chr5; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 194 - 287
Target Start/End: Original strand, 14221183 - 14221276
Alignment:
Q  194 gcgatgtgggactaaatataagtgacttgtgaaagtttagtcaccactcgccaaattgagttccaaaatcattgttacacacatccactgcaca 287  Q
    |||||||||||||||| |  |||||| ||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  14221183 gcgatgtgggactaaagacgagtgacgtgtgaaacttttgtcaccactcgccaaattcagttccaaaatcattgttacacacatccaatgcaca 14221276  T

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Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 318 - 396
Target Start/End: Original strand, 14219552 - 14219630
Alignment:
Q  318 attacaagaataaagatctatgaactaggaatcagccccaaacacttcaaaactacagacaataaaacaaatgcatcct 396  Q
    ||||||||||||||  |||||| |||||||||||||||||||||| ||||| |||||||||| |||  |||||||||||    
T  14219552 attacaagaataaacgtctatggactaggaatcagccccaaacacctcaaagctacagacaacaaataaaatgcatcct 14219630  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 280
Target Start/End: Original strand, 14230874 - 14230957
Alignment:
Q  197 atgtgggactaaatataagtgacttgtgaaagtttagtcaccactcgccaaattgagttccaaaatcattgttacacacatcca 280  Q
    |||||||||||| | | |||||||||| ||| |||||||| |||||||||||||  | |||||||| ||| || ||||||||||    
T  14230874 atgtgggactaagtttgagtgacttgtcaaactttagtcatcactcgccaaattatgctccaaaataattttttcacacatcca 14230957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 152 - 287
Target Start/End: Original strand, 14221963 - 14222101
Alignment:
Q  152 tgtttatatatagccttgagcctcatctcatctctcatactagcgatgtgggactaa---atataagtgacttgtgaaagtttagtcaccactcgccaaa 248  Q
    ||||||||||||| ||| | ||||||||||||||||||| |   |||||||||||||    ||| |||||||||| ||| |||| |||||||| ||||||    
T  14221963 tgtttatatataggcttaa-cctcatctcatctctcatattgaagatgtgggactaatttgtatgagtgacttgtaaaactttaatcaccacttgccaaa 14222061  T
Q  249 ttgagttccaaaatc-attgttacacacatccactgcaca 287  Q
    || |  | |||||||  |||||  ||||||||||||||||    
T  14222062 ttcaactacaaaatcttttgttttacacatccactgcaca 14222101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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