View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11837_high_15 (Length: 424)
Name: NF11837_high_15
Description: NF11837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11837_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 54 - 408
Target Start/End: Complemental strand, 17665029 - 17664672
Alignment:
| Q |
54 |
aaactatattgattgttgtcagtatgtttttcaaagtttataatctaaatcagtataatttctcataagtaacatcacattttagaacatattcaatcac |
153 |
Q |
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| T |
17665029 |
aaactatattgattgttgtcaatatgtttttcaaactttataatctaaatcagtataatttctcgtaagtaacatcacattttagaacatattcaatcac |
17664930 |
T |
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| Q |
154 |
taaattatatatgataaattgaagaatataagataaatattgtattacgatataaggtaaaacacaattatcccaaaactatgataataatataaaaata |
253 |
Q |
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| T |
17664929 |
taaattatatatgataaattgaagaatataagataaatattgtattacgatataaggtaaaacacaattatcccaaaactatgataataatataaaaata |
17664830 |
T |
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| Q |
254 |
attattataattacaagta----atacaacttattcaagcannnnnnngccatgaaatacaacaggaccgtacaattaaatgaatattgcttaattgcca |
349 |
Q |
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| T |
17664829 |
attattataattacaagtaatatatacaacttattcaagca-ttttttgccatcaaatacaacaggaccgtacaattaaatgaatattgcttaattgcca |
17664731 |
T |
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| Q |
350 |
tacttaggcctaacttcgattccttcaataaacaaatttcccctcacccacgtaccact |
408 |
Q |
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| T |
17664730 |
tacttaggcctaacttcgattccttcaataaacaaatttcccctcacccacgtaccact |
17664672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 187 - 414
Target Start/End: Complemental strand, 19247285 - 19247069
Alignment:
| Q |
187 |
taaatattgtattacgatataaggtaaaacacaattatcccaaaactatgataataatataaaaataattattataattacaagtaatacaacttattca |
286 |
Q |
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| T |
19247285 |
taaatattgtattacgatataaggtaaaacacaattatcccaaaattatgataataatataaaaataattattataattacaagtaatacaacttat--- |
19247189 |
T |
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| Q |
287 |
agcannnnnnngccatgaaatacaacaggaccgtacaattaaatgaatattgcttaattgccatacttaggcctaacttcgattccttcaataaacaaat |
386 |
Q |
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| T |
19247188 |
--------gtggacttcaaatacaacaggaccgtacaattaaatgaatattgcttaattgccatacttaggcctaacttcgattccttcaataaacaaat |
19247097 |
T |
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| Q |
387 |
ttcccctcacccacgtaccacttctctg |
414 |
Q |
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| T |
19247096 |
ttcccctcacccacgtaccactcctctg |
19247069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 9 - 158
Target Start/End: Complemental strand, 19247430 - 19247281
Alignment:
| Q |
9 |
tatgacatatctcttgaaacttattaaacattagcagaacagcccaaactatattgattgttgtcagtatgtttttcaaagtttataatctaaatcagta |
108 |
Q |
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| T |
19247430 |
tatgacatatctcttgaaacttattaaacattagcagaacaacccaaactatattgattgttgtcaatatgtttttcaaactttataatctaaatcagta |
19247331 |
T |
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| Q |
109 |
taatttctcataagtaacatcacattttagaacatattcaatcactaaat |
158 |
Q |
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| T |
19247330 |
taatttctcataagtaacatcacattttagaacatattcaatcactaaat |
19247281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 391
Target Start/End: Complemental strand, 899946 - 899878
Alignment:
| Q |
323 |
aattaaatgaatattgcttaattgccatacttaggcctaacttcgattccttcaataaacaaatttccc |
391 |
Q |
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| T |
899946 |
aattcaatgaatattgcttaattttcctccttaggcctaacttctattccttcaagaaagaaatttccc |
899878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 386
Target Start/End: Complemental strand, 33138802 - 33138746
Alignment:
| Q |
329 |
atgaatattgcttaattgccatacttaggcctaacttcgattccttcaataaacaaat |
386 |
Q |
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| T |
33138802 |
atgaatattgcttaattctcttacttaggc-taacttctattccttcaataaacaaat |
33138746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 391
Target Start/End: Original strand, 35476287 - 35476348
Alignment:
| Q |
330 |
tgaatattgcttaattgccatacttaggcctaacttcgattccttcaataaacaaatttccc |
391 |
Q |
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| T |
35476287 |
tgaatgttgcttaattgtcttccttaggtctaacttctattccttcaagaaagaaatttccc |
35476348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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