View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11837_high_17 (Length: 393)
Name: NF11837_high_17
Description: NF11837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11837_high_17 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 2 - 393
Target Start/End: Original strand, 11134138 - 11134529
Alignment:
| Q |
2 |
aatatacttaacgttttttcttttctgctgcctattaattatttaaacctttgaaacatatttagtttcattcaatatgctcagtgtatgttaggtcatt |
101 |
Q |
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| T |
11134138 |
aatatacttaacgttttttcttttctgctgcctattaattatttaaacctttgaaacatatttagtttcattcaatatgctcagtgtatgttaggtcatt |
11134237 |
T |
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| Q |
102 |
tggttccacgtttgtaggagaggcaaaattgattccggaggtgtggaattgatttgacatgtttagattttctctagtagaattaattatgcctccagaa |
201 |
Q |
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| T |
11134238 |
tggttccacgtttgtaggagaggcaaaattgataccggaggtgtggaattgatttgacatgtttggattttctcgagtagaattaattatgcctccaaaa |
11134337 |
T |
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| Q |
202 |
tcgagtgcatgtttggtatcacggtgggtttgctagaatcttggttgagccactgtgatacaaatagacattgattctaaattgaagtaagagctatttc |
301 |
Q |
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| T |
11134338 |
tcgagtgcatgtttggtatcacggtgggtttgctagaatcttggttgagccactgtgatacaaataaacactgattctaaattgaagtaagagctatttc |
11134437 |
T |
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| Q |
302 |
ccctaatattagcctaaatttcttcttcaattcacttttattgaacgtatgtagacacaaatcacttaacgttcaactcactttcattcaaa |
393 |
Q |
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| T |
11134438 |
ctctaatattagcctaaatttcttcttcaattcacttttattgaacgtatgtagacacaaatcattttacgttcaactcactttcattcaaa |
11134529 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 234
Target Start/End: Original strand, 27870593 - 27870622
Alignment:
| Q |
205 |
agtgcatgtttggtatcacggtgggtttgc |
234 |
Q |
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| T |
27870593 |
agtgcatgtttggtatcacggtgggtttgc |
27870622 |
T |
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