View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11837_high_18 (Length: 328)
Name: NF11837_high_18
Description: NF11837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11837_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 314
Target Start/End: Original strand, 55269371 - 55269667
Alignment:
| Q |
18 |
cttcactccagttccttcaggaaatcttcattgtcaaccaacacctacacacacaaaattaacatgatgttagaaacctctaggcattgatgcatttgtc |
117 |
Q |
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| T |
55269371 |
cttcactccagttccttcaggaaatcttcattgtcaactaacacctacacacaaaaaattaacatgatgttagaaacctctaggcattgatgcatttgtc |
55269470 |
T |
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| Q |
118 |
atgtggtcattcactgaccgaacactaaggttttgtacgagagtttggaggaaaaggaaggtgaggaatctgaggataacaggagaaagaaagattatga |
217 |
Q |
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| T |
55269471 |
atgtggtcattcactgaccgaacactaaggttttgtacgagagtttggaggaaagggaaggtgaggaatctgaggataacaggagaaagaaagattatga |
55269570 |
T |
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| Q |
218 |
gaatttggaaataaatatacaattttacaaaaatgaggatggaagtaaagaggctttccacaaatacaattaaataaatataaattgcaatcatact |
314 |
Q |
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| T |
55269571 |
gaatttgaaaataaatatacaattttacaaaaatgaggatggaagtaaagaggctttccacaaatacaattaaatagatataaattgcaatcatact |
55269667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 171
Target Start/End: Original strand, 55262668 - 55262825
Alignment:
| Q |
18 |
cttcactccagttccttcaggaaatcttcattgtcaaccaacacctacacacacaaaattaacatgatgttagaaacctctaggcattgatgcatttgtc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| | ||| | |||||||| |||||||||| ||||||||||||||||||| |
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| T |
55262668 |
cttcactccagttccttcaggaaatcttcattgtcaaccaacgcctacacaaaaaaattaaacatgatattagaaacctataggcattgatgcatttgta |
55262767 |
T |
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| Q |
118 |
atgtggtcattcac----tgaccgaacactaaggttttgtacgagagtttggaggaaa |
171 |
Q |
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| T |
55262768 |
atgtggtcgttcaccgaacgaccgaccactaaggttttgtacgggagtttggaggaaa |
55262825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 8298018 - 8298063
Alignment:
| Q |
18 |
cttcactccagttccttcaggaaatcttcattgtcaaccaacacct |
63 |
Q |
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| T |
8298018 |
cttcactccagttccttcagaaaatcttgattgtcaaccaacacct |
8298063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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