View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11837_high_2 (Length: 911)

Name: NF11837_high_2
Description: NF11837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11837_high_2
NF11837_high_2
[»] chr7 (7 HSPs)
chr7 (14-531)||(22076843-22077354)
chr7 (645-894)||(22076451-22076700)
chr7 (654-827)||(8460893-8461067)
chr7 (771-894)||(9992103-9992225)
chr7 (762-894)||(29586486-29586618)
chr7 (698-823)||(13164937-13165065)
chr7 (52-90)||(31210854-31210892)
[»] chr4 (3 HSPs)
chr4 (14-531)||(68486-68997)
chr4 (14-95)||(40458553-40458626)
chr4 (793-894)||(55160932-55161033)
[»] chr2 (2 HSPs)
chr2 (14-540)||(40446610-40447132)
chr2 (748-824)||(35673190-35673268)
[»] chr1 (4 HSPs)
chr1 (14-540)||(337237-337759)
chr1 (14-95)||(43408286-43408359)
chr1 (14-87)||(37667677-37667742)
chr1 (793-839)||(48298571-48298617)
[»] scaffold0758 (1 HSPs)
scaffold0758 (698-818)||(514-634)
[»] chr5 (4 HSPs)
chr5 (698-821)||(37999800-37999923)
chr5 (698-821)||(30909033-30909155)
chr5 (771-868)||(25668470-25668566)
chr5 (654-821)||(42639947-42640117)
[»] chr8 (2 HSPs)
chr8 (757-873)||(41959537-41959654)
chr8 (793-847)||(22641242-22641296)
[»] chr3 (2 HSPs)
chr3 (688-824)||(29447814-29447951)
chr3 (758-821)||(9102656-9102719)
[»] scaffold0016 (1 HSPs)
scaffold0016 (771-823)||(106894-106946)
[»] chr6 (2 HSPs)
chr6 (761-819)||(32451661-32451720)
chr6 (793-823)||(24991162-24991192)


Alignment Details
Target: chr7 (Bit Score: 472; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 14 - 531
Target Start/End: Complemental strand, 22077354 - 22076843
Alignment:
Q  14 taggacatacacgaattttgtgaggaataagtcaataaactctaggaattgattgatgagcttggaaaatatttgtatacaaaatgatttgtgtagtcaa 113  Q
    ||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22077354 taggacatacacgaattttgtgaggaataa--------actctaggaattgattgatgagcttggaaaatatttgtatacaaaatgatttgtgtagtcaa 22077263  T
Q  114 agaataggaagtaataagagaatattgtgagagggaacaatttgcgtatggtcatttggagggggatggagtttgccttctaggtttggcta--tatatt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  22077262 agaataggaagtaataagagaatattgtgagagggaacaatttgcgtatggtcatttggagggggatggagtttgccttctaggtttggctaattatatt 22077163  T
Q  212 ggtggaagaaactgatttcaatgtgtaactcacccaactaattaatccaacgtgtgagagaaagggaaatacatggtatggctttagcttggacaatgaa 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22077162 ggtggaagaaactgatttcaatgtgtaactcacccaactaattaatccaacgtgtgagagaaagggaaatacatggtatggctttagcttggacaatgaa 22077063  T
Q  312 atagaaatattttcaccatgaactcgtatgctcatatgtatcggctgagttagaactggctggtaactctcctacactcacgtcctatactttttatacg 411  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22077062 atagaaatattttcaccatgaactcgtatgctcatatgtataggctgagttagaactggctggtaactctcctacactcacgtcctatactttttatacg 22076963  T
Q  412 caaaaggatatataactgctattatttctcccactcaaagccactagaaccgattaattaggatgcaaaaagcaaggtatttgactcggcagttaggcaa 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  22076962 caaaaggatatataactgctattatttctcccactcaaagccactagaaccgattaattaggatgcaaaaagcaaggtatttgactcagcagttaggcaa 22076863  T
Q  512 ccaaagaactatactatata 531  Q
    ||||||||||||||||||||    
T  22076862 ccaaagaactatactatata 22076843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 242; E-Value: 1e-133
Query Start/End: Original strand, 645 - 894
Target Start/End: Complemental strand, 22076700 - 22076451
Alignment:
Q  645 gcagcaaataaggattagaataaaaacatctaagaagttattatcttttctttttcacaccaaaatgatttgtaaaaagagaaatggtttgaatcattga 744  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  22076700 gcagcaaataaggattagaataaaaacatctaagaagttattatcttttctttttcacaccaaaatgatttgtaaaaagagaaatggtttgaatcatgga 22076601  T
Q  745 gggaatcaaatactaaataattaaccaagtagaaaatgtcaagttttgtcttaaatttttcacacataaaataaattgtcaaataaattataaatcaaga 844  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  22076600 gggaatcaaatactaaataattaaccaagtagaaaatgtcaagttttgtcttaaatttttcacgcataaaataaattgtcaaataaattataaatcaaga 22076501  T
Q  845 aaaatactatggatgacatatatataatggatagaaatttcgggatgtta 894  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22076500 aaaatactatggatgacatatatataatggatagaaatttcgggatgtta 22076451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 654 - 827
Target Start/End: Complemental strand, 8461067 - 8460893
Alignment:
Q  654 aaggattagaataa--aaacatctaagaagttattatcttttctttttc-acaccaaaatgatttgtaaaaagagaaatggtttgaatcattgagggaat 750  Q
    ||||||||||||||  |||||| |||||| | ||||||||||||||||| |||||||| |||||| ||||||  ||| |||||||||| || || |||||    
T  8461067 aaggattagaataacaaaacatttaagaaataattatcttttctttttccacaccaaattgatttataaaaat-gaagtggtttgaataatagatggaat 8460969  T
Q  751 caaatactaaataattaaccaa-gtagaaaatgtcaagttttgtcttaaatttttcacacataaaataaattgtcaaa 827  Q
    ||||| |||  |||| |||||| ||||||| ||||||| ||| ||||||||||| |||||||||||| ||||||||||    
T  8460968 caaattctatctaatcaaccaaagtagaaa-tgtcaaggtttttcttaaatttt-cacacataaaatgaattgtcaaa 8460893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 771 - 894
Target Start/End: Complemental strand, 9992225 - 9992103
Alignment:
Q  771 aagtagaaaatgtcaagttttgtcttaaatttttcacacataaaataaattgtcaaataaattataaatcaagaaaaatactatggatgacatatatata 870  Q
    |||||| |||||||||  ||| |||||||| ||| || |||||||||| ||||  ||||||||||||||||||||||||| ||   ||||||||||||||    
T  9992225 aagtaggaaatgtcaatattt-tcttaaatattttacgcataaaataagttgtagaataaattataaatcaagaaaaatattacaaatgacatatatata 9992127  T
Q  871 atggatagaaatttcgggatgtta 894  Q
    ||| ||| |||| |||||||||||    
T  9992126 atgtataaaaatatcgggatgtta 9992103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 762 - 894
Target Start/End: Complemental strand, 29586618 - 29586486
Alignment:
Q  762 taattaaccaa-gtagaaaatgtcaagttttgtcttaaatttttcacacataaaataaattgtcaaataaattataaatcaagaaaaatactatggatga 860  Q
    ||||||||||| |||| |||||||||  ||| |||||||| ||| || |||||||||| ||||  ||||||||||||||||||||||||| ||   ||||    
T  29586618 taattaaccaaagtaggaaatgtcaatattt-tcttaaatattttacgcataaaataagttgtagaataaattataaatcaagaaaaatattactaatga 29586520  T
Q  861 catatatataatggatagaaatttcgggatgtta 894  Q
    ||||||||||||| ||| ||||  ||||||||||    
T  29586519 catatatataatgtataaaaataccgggatgtta 29586486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 698 - 823
Target Start/End: Original strand, 13164937 - 13165065
Alignment:
Q  698 ttcacaccaaaatgatttgtaaaaaga--gaaatggtttgaatcattgagggaatcaaatactaaataattaaccaa-gtagaaaatgtcaagttttgtc 794  Q
    ||||||||||  |||||| |||||| |  |||||||||||||| || || |||||||||| |||| ||| ||  ||| ||||||||||||||| ||| ||    
T  13164937 ttcacaccaagttgatttataaaaaaaatgaaatggtttgaataatagatggaatcaaattctaagtaaataggcaaagtagaaaatgtcaaggtttttc 13165036  T
Q  795 ttaaatttttcacacataaaataaattgt 823  Q
    ||||||||| |||| ||||||||||||||    
T  13165037 ttaaattttccacatataaaataaattgt 13165065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 90
Target Start/End: Complemental strand, 31210892 - 31210854
Alignment:
Q  52 actctaggaattgattgatgagcttggaaaatatttgta 90  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  31210892 actctaggaattgattgataaacttggaaaatatttgta 31210854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 437; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 14 - 531
Target Start/End: Complemental strand, 68997 - 68486
Alignment:
Q  14 taggacatacacgaattttgtgaggaataagtcaataaactctaggaattgattgatgagcttggaaaatatttgtatacaaaatgatttgtgtagtcaa 113  Q
    ||||||||||||||||||||||||||||||        |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  68997 taggacatacacgaattttgtgaggaataa--------actctaggaattgattgatgagcttg-aaaatatttgtatacaaaatgatttgtgtagtcaa 68907  T
Q  114 agaataggaagtaataagagaatattgtgagagggaacaatttgcgtatggtcatttggagggggatggagtttgccttctaggtttggcta--tatatt 211  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  68906 agaataggaagtaataagagaatattgcgagagggaacaatttgcgtatggtcatttggagggggatggagtttgccttctaggtttggctaattatatt 68807  T
Q  212 ggtggaagaaactgatttcaatgtgtaactcacccaactaattaatccaacgtgtgagagaaagggaaatacatggtatggctttagcttggacaatgaa 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  68806 ggtggaagaaactgatttcaatgtgtaactcacccaactaattaatccaacgtgtgagagaaagggaa-tacatggtatggctttagcttggacaatgaa 68708  T
Q  312 atagaaatattttcaccatgaactcgtatgctcatatgtatcggctgagttagaactggctggtaactctcctacactcacgtcctatactttttatacg 411  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  68707 atagaaatattttcaccatgaactcgtatgctcatatgtataggctgagttagaactggctggtaactctcctacactcacgtcctatactttttatacg 68608  T
Q  412 caaaaggatatataac---tgctattatttctcccactcaaagccactagaaccgattaattaggatgcaaaaagcaaggtatttgactcggcagttagg 508  Q
    ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  68607 caaaaggatatataactgttgctattatttctcccactcaaagccactagaaccgattaattaggatgc-aaaagcaaggtatttgactcggcagttagg 68509  T
Q  509 caaccaaagaactatactatata 531  Q
    |||||||||||||||||||||||    
T  68508 caaccaaagaactatactatata 68486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 40458626 - 40458553
Alignment:
Q  14 taggacatacacgaattttgtgaggaataagtcaataaactctaggaattgattgatgagcttggaaaatatttgtatacaa 95  Q
    ||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||    
T  40458626 taggacatacacgaattttgtgaggaataa--------actctaggaattgattgatgagcttggaaaatatttgtatacaa 40458553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 793 - 894
Target Start/End: Complemental strand, 55161033 - 55160932
Alignment:
Q  793 tcttaaatttttcacacataaaataaattgtcaaataaattataaatcaagaaaaatactatggatgacatatatataatggatagaaatttcgggatgt 892  Q
    |||||| || || ||||||| ||||| ||||  |||||||||||||||||||| |||| ||    |||||||||||||||  ||| |||| |||||||||    
T  55161033 tcttaagttctttacacatataataagttgtagaataaattataaatcaagaagaatattacaactgacatatatataatatataaaaatatcgggatgt 55160934  T
Q  893 ta 894  Q
    ||    
T  55160933 ta 55160932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 14 - 540
Target Start/End: Complemental strand, 40447132 - 40446610
Alignment:
Q  14 taggacatacacgaattttgtgaggaataagtcaataaactctaggaattgattgatgagcttggaaaatatttgtatacaaaatgatttgtgtagtcaa 113  Q
    ||||||||||||||||||||||||||||||        ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  40447132 taggacatacacgaattttgtgaggaataa--------actctaggagttgattgatgagcttggaaaaaatttgtatacaaaatgatttgtgtagtcaa 40447041  T
Q  114 agaataggaagtaataagagaatattgtgagagggaacaatttgcgtatggtcatttggagggggatggagtttgccttctaggtttggcta--tatatt 211  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||  ||||||    
T  40447040 agaataggaagtaataagagaatactgtgagagggaacaatttgcgtatgatcctttggagggggatggagtttgccttctaggtttggctaattatatt 40446941  T
Q  212 ggtggaagaaactgatttcaatgtgtaactcacccaactaattaatccaacgtgtgagagaaagggaaatacatggtatggctttagcttggacaatgaa 311  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40446940 ggtggaagaaactgatttcaatgtgtaactcacccaactaattgatccaacgtgtgagagaaaggg-aatacatggtatggctttagcttggacaatgaa 40446842  T
Q  312 atagaaatattttcaccatgaactcgtatgctcatatgtatcggctgagttagaactggctggtaactctcctacactcacgtcctatactttttatacg 411  Q
    |||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40446841 atagaaatattttcaccatgaattcatatgctcatatgtataggctgagttagaactggctggtaactctcctacactcacgtcctatactttttatacg 40446742  T
Q  412 caaaaggatatataac---tgctattatttctcccactcaaagccactagaaccgattaattaggatgcaaaaagcaaggtatttgactcggcagttagg 508  Q
    || |||||||||||||   |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  40446741 cagaaggatatataactgttgctattatttctcccactcaaagccactagaaccgataaattaggatgcaaaatgcaaggtatttgactcggcagttagg 40446642  T
Q  509 caaccaaagaactatactatatatatagatcc 540  Q
    ||||||||||||||||||| || |||||||||    
T  40446641 caaccaaagaactatactacatctatagatcc 40446610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 748 - 824
Target Start/End: Original strand, 35673190 - 35673268
Alignment:
Q  748 aatcaaatactaaataattaaccaa-gtagaaaatgtcaagttttgtcttaaatttttcacacat-aaaataaattgtc 824  Q
    |||||||| |||||||||||||||| ||||||||||||||| ||| ||||||||||||||| ||| |||||||||||||    
T  35673190 aatcaaattctaaataattaaccaaagtagaaaatgtcaaggtttttcttaaatttttcacccataaaaataaattgtc 35673268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 414; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 14 - 540
Target Start/End: Complemental strand, 337759 - 337237
Alignment:
Q  14 taggacatacacgaattttgtgaggaataagtcaataaactctaggaattgattgatgagcttggaaaatatttgtatacaaaatgatttgtgtagtcaa 113  Q
    ||||||||||||||||||||||||||||||        ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  337759 taggacatacacgaattttgtgaggaataa--------actctaggagttgattgatgagcttggaaaatatttgtatacaaaatgatttgtgtagtcaa 337668  T
Q  114 agaataggaagtaataagagaatattgtgagagggaacaatttgcgtatggtcatttggagggggatggagtttgccttctaggtttggcta--tatatt 211  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||  ||||||    
T  337667 agaataggaagtaataagagaatactgtgagagggaataatttgcgtatgatcctttggagggggatggagtttgccttctaggtttggctaattatatt 337568  T
Q  212 ggtggaagaaactgatttcaatgtgtaactcacccaactaattaatccaacgtgtgagagaaagggaaatacatggtatggctttagcttggacaatgaa 311  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  337567 ggtggaagaaactgatttcaatgtgtaactcacccaactaattgatccaacgtgtgagagaaaggg-aatacatggtatggctttagcttggacaatgaa 337469  T
Q  312 atagaaatattttcaccatgaactcgtatgctcatatgtatcggctgagttagaactggctggtaactctcctacactcacgtcctatactttttatacg 411  Q
    |||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  337468 atagaaatattttcaccatgaattcatatgctcatatgtataggctgagttagaactggctggtaactctcctacactcacgtcctatactttttatacg 337369  T
Q  412 caaaaggatatataac---tgctattatttctcccactcaaagccactagaaccgattaattaggatgcaaaaagcaaggtatttgactcggcagttagg 508  Q
    || |||||||||||||   |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  337368 cagaaggatatataactgttgctattatttctcccactcaaagccactagaaccgataaattaggatgcaaaatgcaaggtatttgactcggcagttagg 337269  T
Q  509 caaccaaagaactatactatatatatagatcc 540  Q
    ||||||||||||||||||| || |||||||||    
T  337268 caaccaaagaactatactacatctatagatcc 337237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 43408286 - 43408359
Alignment:
Q  14 taggacatacacgaattttgtgaggaataagtcaataaactctaggaattgattgatgagcttggaaaatatttgtatacaa 95  Q
    |||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||    
T  43408286 taggacatacacgaattttgtgaggaata--------aactctaggaattgattgatgagcttggaaaatatttgtatacaa 43408359  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 37667677 - 37667742
Alignment:
Q  14 taggacatacacgaattttgtgaggaataagtcaataaactctaggaattgattgatgagcttggaaaatattt 87  Q
    |||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||    
T  37667677 taggacatacacgaattttgtgaggaata--------aactctaggaattgattgatgagcttggaaaatattt 37667742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 793 - 839
Target Start/End: Original strand, 48298571 - 48298617
Alignment:
Q  793 tcttaaatttttcacacataaaataaattgtcaaataaattataaat 839  Q
    ||||||||| || ||||||||||||||||||  ||||||||||||||    
T  48298571 tcttaaattctttacacataaaataaattgttgaataaattataaat 48298617  T

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Target: scaffold0758 (Bit Score: 58; Significance: 6e-24; HSPs: 1)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 698 - 818
Target Start/End: Original strand, 514 - 634
Alignment:
Q  698 ttcacaccaaaatgatttgtaaaaagagaaatggtttgaatcattgagggaatcaaatactaaataattaaccaa-gtagaaaatgtcaagttttgtctt 796  Q
    ||||||||||| |||||| ||||||  |||||||||||||| || ||  || |||||| |||||||||||||||| ||||||||||||||| ||| ||||    
T  514 ttcacaccaaattgatttataaaaat-gaaatggtttgaataatagatagactcaaattctaaataattaaccaaagtagaaaatgtcaaggtttttctt 612  T
Q  797 aaatttttcacacataaaataa 818  Q
    ||||||| ||||||||||||||    
T  613 aaattttgcacacataaaataa 634  T

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Target: chr5 (Bit Score: 53; Significance: 6e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 698 - 821
Target Start/End: Complemental strand, 37999923 - 37999800
Alignment:
Q  698 ttcacaccaaaatgatttgtaaaaagagaaatggtttgaatcattgagggaatcaaatactaaataattaaccaagt-agaaaatgtcaagttttgtctt 796  Q
    ||||||||||| |||||| ||||||  |||||||||||||| || || | | |||||| ||||||||||||||| |  ||||||||||||||||| ||||    
T  37999923 ttcacaccaaattgatttataaaaat-gaaatggtttgaataatagatgaactcaaattctaaataattaaccacgggagaaaatgtcaagttttttctt 37999825  T
Q  797 aaatttttcacacataaaataaatt 821  Q
    ||||||| ||||||| |||||||||    
T  37999824 aaattttccacacatgaaataaatt 37999800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 698 - 821
Target Start/End: Complemental strand, 30909155 - 30909033
Alignment:
Q  698 ttcacaccaaaatgatttgtaaaaagagaaatggtttgaatcattgagggaatcaaatactaaataattaac-caagtagaaaatgtcaagttttgtctt 796  Q
    ||||||||||| |||||| ||||||  |||||||||||||| || || ||| |||||| |||||||||||||  ||||||||||||||||| ||| ||||    
T  30909155 ttcacaccaaattgatttataaaaat-gaaatggtttgaataatagatggactcaaattctaaataattaactaaagtagaaaatgtcaaggtttttctt 30909057  T
Q  797 aaatttttcacacataaaataaatt 821  Q
    ||| ||| |||| ||||||||||||    
T  30909056 aaa-tttgcacatataaaataaatt 30909033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 771 - 868
Target Start/End: Complemental strand, 25668566 - 25668470
Alignment:
Q  771 aagtagaaaatgtcaagttttgtcttaaatttttcacacataaaataaattgtcaaataaattataaatcaagaaaaatactatggatgacatatata 868  Q
    ||||||||||||||||| ||| |||||||| ||| || |||||||||| ||||  |||||||||||| ||||||| |||| || | ||||||||||||    
T  25668566 aagtagaaaatgtcaagattt-tcttaaatattttacgcataaaataagttgtagaataaattataactcaagaagaatattacgaatgacatatata 25668470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 654 - 821
Target Start/End: Complemental strand, 42640117 - 42639947
Alignment:
Q  654 aaggattagaataaaaaca---tctaagaagttattatcttttctttttcacaccaaaatgatttgtaaaaagagaaatggtttgaatcattgagggaat 750  Q
    ||||||||||||||||| |   | |||||| | |||||||| | || | ||||||||| |||||| |||| |   ||||||||||||| || || || |     
T  42640117 aaggattagaataaaaagaaaatttaagaaataattatcttattttctccacaccaaattgatttataaagatt-aaatggtttgaataatagatgggag 42640019  T
Q  751 caaatactaaataattaaccaa-gtagaaaatgtcaagttttgtcttaaatttttcacacataaaataaatt 821  Q
    | |||  ||||||||||||||| ||||||||||||||| ||| ||||||||| || ||||||| ||||||||    
T  42640018 ccaattataaataattaaccaaagtagaaaatgtcaaggtttttcttaaattctttacacatataataaatt 42639947  T

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Target: chr8 (Bit Score: 46; Significance: 9e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 757 - 873
Target Start/End: Original strand, 41959537 - 41959654
Alignment:
Q  757 ctaaataattaaccaa-gtagaaaatgtcaagttttgtcttaaatttttcacacataaaataaattgtcaaataaattataaatcaagaaaaatactatg 855  Q
    |||| ||||||||||| |||| |||||||||  ||| | |||||| ||| || |||||||||| ||||  |||||||||||||| |||||||||| || |    
T  41959537 ctaattaattaaccaaagtaggaaatgtcaatattttttttaaatattttacgcataaaataagttgtagaataaattataaattaagaaaaatattacg 41959636  T
Q  856 gatgacatatatataatg 873  Q
     |||||||||||||||||    
T  41959637 aatgacatatatataatg 41959654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 793 - 847
Target Start/End: Original strand, 22641242 - 22641296
Alignment:
Q  793 tcttaaatttttcacacataaaataaattgtcaaataaattataaatcaagaaaa 847  Q
    ||||||||| || |||| |||||||| ||||  ||||||||||||||||||||||    
T  22641242 tcttaaattctttacacgtaaaataagttgttgaataaattataaatcaagaaaa 22641296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 688 - 824
Target Start/End: Complemental strand, 29447951 - 29447814
Alignment:
Q  688 tcttttctttttcacaccaaaatgatttgtaaaaagagaaatggtttgaatcattgagggaatcaaatactaaataattaacc-aagtagaaaatgtcaa 786  Q
    |||||| ||||| |||||||| |||||| ||||||  ||| |  ||||||| || || |||||||||| |||||||||||||| ||||||||||||| ||    
T  29447951 tctttttttttttacaccaaattgatttataaaaat-gaagtattttgaatgatagatggaatcaaattctaaataattaaccaaagtagaaaatgttaa 29447853  T
Q  787 gttttgtcttaaatttttcacacat-aaaataaattgtc 824  Q
      ||| |||||||||||| || ||| |||||||||||||    
T  29447852 agtttttcttaaattttttacccataaaaataaattgtc 29447814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 758 - 821
Target Start/End: Complemental strand, 9102719 - 9102656
Alignment:
Q  758 taaataattaaccaagtagaaaatgtcaagttttgtcttaaatttttcacacataaaataaatt 821  Q
    |||||||||||| ||||||||||||||||| ||| ||||||||| || ||||||| ||||||||    
T  9102719 taaataattaacaaagtagaaaatgtcaaggtttttcttaaattctttacacatataataaatt 9102656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 771 - 823
Target Start/End: Complemental strand, 106946 - 106894
Alignment:
Q  771 aagtagaaaatgtcaagttttgtcttaaatttttcacacataaaataaattgt 823  Q
    ||||||||||||| | | ||| |||||||||||||| ||||||||||||||||    
T  106946 aagtagaaaatgttacgatttttcttaaatttttcagacataaaataaattgt 106894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 761 - 819
Target Start/End: Original strand, 32451661 - 32451720
Alignment:
Q  761 ataattaaccaa-gtagaaaatgtcaagttttgtcttaaatttttcacacataaaataaa 819  Q
    |||||||||||| ||||||||||||||| ||| ||||||||| ||  |||||||||||||    
T  32451661 ataattaaccaaagtagaaaatgtcaaggtttttcttaaattgttttcacataaaataaa 32451720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 793 - 823
Target Start/End: Complemental strand, 24991192 - 24991162
Alignment:
Q  793 tcttaaatttttcacacataaaataaattgt 823  Q
    |||||||||||||||||||||||||||||||    
T  24991192 tcttaaatttttcacacataaaataaattgt 24991162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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