View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11837_high_21 (Length: 297)
Name: NF11837_high_21
Description: NF11837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11837_high_21 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 289
Target Start/End: Original strand, 23222203 - 23222473
Alignment:
| Q |
19 |
aaaactcctgtcgataagctttttatcagaaactataagaagagagctagtggatcattaagactgtgaaccatgcttatggttgagatttgtttggagg |
118 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23222203 |
aaaactcctttcgataagctttttatcagaaactataagaagagagctagtggatcattaagactgtgaaccatgcttatggttgagatttgtttggagg |
23222302 |
T |
|
| Q |
119 |
tgttgttttctgggctactggtttccttctgttgctgtacgttaccaaagtacctttaatttcagcctcttggtagttnnnnnnnnnnnnnnnnnnttac |
218 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
23222303 |
tgttgctttctgggctactggtttccttctgttactgtacgttaccaaagaacctttaatttcagcctcttggtagttaaaaaaaaaataaaaaaattac |
23222402 |
T |
|
| Q |
219 |
aaagagagaggattgaaatatctaatccccaaatcaaactcattcttcctcatgatctctccattcatctc |
289 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23222403 |
aaagagagaggattgaaatctctaatccccaaatcaaactcattcttcctcatgatctctccattcatctc |
23222473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 19 - 289
Target Start/End: Original strand, 4187119 - 4187377
Alignment:
| Q |
19 |
aaaactcctgtcgataagctttttatcagaaactataagaagagagctagtggatcattaagactgtgaaccatgcttatggttgagatttgtttggagg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4187119 |
aaaactcctgtcgataagctttttatcagaaactataagaagagagctagtggatcattaagactgtgaaccatgcttatggttgagatttgtttggagg |
4187218 |
T |
|
| Q |
119 |
tgttgttttctgggctactggtttccttctgttgctgtacgttaccaaagtacctttaatttcagcctcttggtagttnnnnnnnnnnnnnnnnnnttac |
218 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4187219 |
tgttgttttctgggctactggtttcct----------tacgttaccaaagtacctttaatttcagcctcttggtagtt--aaaaaaaataaaaaaattac |
4187306 |
T |
|
| Q |
219 |
aaagagagaggattgaaatatctaatccccaaatcaaactcattcttcctcatgatctctccattcatctc |
289 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4187307 |
aaagagagaggattgaaatctctaatccccaaatgaaactcattcttcctcatgatctctccatccatctc |
4187377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 54 - 196
Target Start/End: Original strand, 54142687 - 54142830
Alignment:
| Q |
54 |
taagaagagagctagtggatcattaagactgtgaaccatgcttatggttgagatttgtttggaggtgttgttttctgggctactggtttccttctgttgc |
153 |
Q |
| |
|
||||||| |||||||||| |||||| | |||||||| || ||||||| ||| ||| | |||||||| ||||||||||| || ||||||||||||||| | |
|
|
| T |
54142687 |
taagaagtgagctagtgggtcattagaattgtgaaccgtgattatggtggagttttatctggaggtgatgttttctgggttattggtttccttctgttac |
54142786 |
T |
|
| Q |
154 |
tgtacgtta-ccaaagtacctttaatttcagcctcttggtagtt |
196 |
Q |
| |
|
||||| ||| ||| ||||||||||||||||||||||| |||||| |
|
|
| T |
54142787 |
tgtactttacccatagtacctttaatttcagcctctttgtagtt |
54142830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 289
Target Start/End: Original strand, 54142844 - 54142891
Alignment:
| Q |
242 |
aatccccaaatcaaactcattcttcctcatgatctctccattcatctc |
289 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
54142844 |
aatccccaaatcaaactccttcttcctcacgatctctccattcatctc |
54142891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University